PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G151266_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 713aa MW: 79652.1 Da PI: 8.407 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.4 | 5.6e-14 | 23 | 72 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++q+++Le+++ +yp+ ee+ e A+ +gLt +qV++WF+ rR ke++ GRMZM2G151266_P01 23 SPQQIQRLEKFYSDVQYPKPEEMGEYATCVGLTYSQVRIWFKERRRKERR 72 79**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.09 | 13 | 73 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-13 | 14 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.12E-8 | 21 | 63 | No hit | No description |
SuperFamily | SSF46689 | 6.84E-13 | 23 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-11 | 23 | 72 | IPR001356 | Homeobox domain |
Pfam | PF15612 | 6.7E-6 | 579 | 610 | IPR028942 | WHIM1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MPRDQMVTNG FGAKRDNAGA KKSPQQIQRL EKFYSDVQYP KPEEMGEYAT CVGLTYSQVR 60 IWFKERRRKE RRMEMGAIGS QMERQFSARS SGPRCSSSSS FCNQAPIYDI SRSESDTWGM 120 STAGEESKIL SQVLFPKDYI LSKIFRKDGP PLGSEFDPLP QSAHGCIRDT TCHHSSENQR 180 TVKKRKIIES TNQRSDVYEN TAPVRKHGIG KGLMTVWHAM YSHNVKCQSG RNFIDETGCL 240 RSLRPFDDFD GLEDRDNGRK TQVKSHLFDK FGKYYIVTAE LAIHKSCMVP TYVQNQGMTR 300 KKIVKRSKVL VNRKKVPCKR VTGPKVHPPM ACHLSVDESE SLELQTELVT LVDDEELELS 360 ELQTDLLAKF PPQSLKMKKL FSTKPWESSP EMVKKLFQPT YIDWRINPDR LSGFGPKQHL 420 LNQEFFNKEK NQMAKYGLRP RTLKGELFAL LSKAGSCGLK VSVLAKSSEI IDLNVSSPLE 480 LEQLISLALS SDITLFEKIA PSAYRLRVDP QIKGEEDSMS DSDDSGSVDE DEDASRSDDG 540 SDGSQKLKFL ENESRLARRK EKNAHGSPNK CSEIDESYSG EKWLLALMEG EYSDLSIDEK 600 LDCLVALIDV VSGAGSVPRL EVVQGWLRAG RTTEMSLGLH ELASEGVHST ALLFLSEGSS 660 PLVLLDSGGL GSHKSCNKGG VGSNDVRGRS SSRRSEVKGS NNHRNNGAKS GNT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G151266 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G151266_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008665623.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
TrEMBL | A0A1D6L888 | 0.0 | A0A1D6L888_MAIZE; Homeobox-DDT domain protein RLT3 | ||||
STRING | GRMZM2G151266_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4556 | 33 | 50 | Representative plant | OGRP9161 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 4e-27 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G151266_P01 |