PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G151205_P01
Common NameLOC103637431, ZEAMMB73_216232
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 290aa    MW: 31355.1 Da    PI: 7.3392
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G151205_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-141462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       rg+W++eEd  l   v+++G+  +W + +++ g++R++k+c++rw++yl
  GRMZM2G151205_P01 14 RGPWSQEEDAVLRSFVQRFGNAgNWIALPQRAGLKRCGKSCRLRWLNYL 62
                       89******************99*************************97 PP
2Myb_DNA-binding383.9e-1269111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T eEd l++ +  + G++ W+  a++++ gRt++++k++w++
  GRMZM2G151205_P01  69 GGFTDEEDRLILSLYGEIGSK-WSVMASRLP-GRTDNDVKNYWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.067962IPR017930Myb domain
SuperFamilySSF466891.76E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-91364IPR001005SANT/Myb domain
PfamPF002492.9E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-221569IPR009057Homeodomain-like
CDDcd001671.73E-71662No hitNo description
PROSITE profilePS5129418.2663117IPR017930Myb domain
SMARTSM007172.1E-1167115IPR001005SANT/Myb domain
PfamPF002494.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2270116IPR009057Homeodomain-like
CDDcd001671.90E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRSPCCDKT RVKRGPWSQE EDAVLRSFVQ RFGNAGNWIA LPQRAGLKRC GKSCRLRWLN  60
YLRPELRHGG FTDEEDRLIL SLYGEIGSKW SVMASRLPGR TDNDVKNYWN TKLKKRYLAS  120
SSTSTTQGRS PPPPSPPPAP APPSGDNSSN AAAAADIHHT HQDEKPCLPP TPPALTEFDT  180
TFADDTLLFK SEQLYAELVG LIGKQSSSTG DRDEASTPSS SSSAARPRRL AAQVAALCGP  240
WTVDVRDTAA LLSEPTTALL DAYGAADDAF GPALSACSFQ DLLASSYVDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141167107B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G151205
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G151205_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2413701e-126AK241370.1 Oryza sativa Japonica Group cDNA, clone: J065154C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657851.10.0transcription factor RAX2
TrEMBLA0A3L6DLI30.0A0A3L6DLI3_MAIZE; Transcription factor MYB87
TrEMBLK7VL260.0K7VL26_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G151205_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.19e-66myb domain protein 87