PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G150841_P03 | ||||||||
Common Name | LOC100193196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 57aa MW: 6253.21 Da PI: 10.3889 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.6e-11 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg W++eEd++lv+ ++++G g+W+++++ g GRMZM2G150841_P03 14 RGLWSPEEDDKLVNHIAKYGHGCWSSVPKLAG 45 789**************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.37E-9 | 9 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 9 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.849 | 9 | 57 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-9 | 14 | 45 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.51E-7 | 17 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
MARRTSGPKK KLRRGLWSPE EDDKLVNHIA KYGHGCWSSV PKLAGSSGIG LLAELSY |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G150841 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G150841_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470079 | 5e-90 | AF470079.1 Zea mays P-type R2R3 Myb protein (Myb20) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001131823.1 | 2e-24 | uncharacterized protein LOC100193196 | ||||
Refseq | XP_002461087.1 | 3e-24 | transcription factor MYB61 | ||||
Swissprot | Q8LPH6 | 6e-17 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A1D6IKP0 | 6e-25 | A0A1D6IKP0_MAIZE; Transcription factor MYB46 | ||||
TrEMBL | A0A3L6E2F2 | 6e-25 | A0A3L6E2F2_MAIZE; Transcription factor MYB86 | ||||
STRING | Sb02g040480.1 | 1e-23 | (Sorghum bicolor) | ||||
STRING | GRMZM2G150841_P01 | 7e-24 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-19 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G150841_P03 |