PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150841_P01
Common NameLOC100193196
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 349aa    MW: 36935 Da    PI: 7.0316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150841_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEd++lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
  GRMZM2G150841_P01 14 RGLWSPEEDDKLVNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                       788*******************************************97 PP
2Myb_DNA-binding521.6e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++++eE++l+++++ ++G++ W+ Ia+ ++ gRt++++k++w++y
  GRMZM2G150841_P01  67 RGAFSQEEEDLIIHLHSMMGNK-WSQIASQLP-GRTDNEVKNFWNSY 111
                        89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.828961IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-25964IPR009057Homeodomain-like
SuperFamilySSF466894.49E-3012108IPR009057Homeodomain-like
SMARTSM007178.7E-141363IPR001005SANT/Myb domain
PfamPF002491.0E-151461IPR001005SANT/Myb domain
CDDcd001675.29E-121761No hitNo description
PROSITE profilePS5129426.53762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2665116IPR009057Homeodomain-like
SMARTSM007172.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.3E-1567111IPR001005SANT/Myb domain
CDDcd001673.45E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MARRTSGPKK KLRRGLWSPE EDDKLVNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSMMGNKWS QIASQLPGRT DNEVKNFWNS YVKKKLRQRG  120
IDPATHKPLP LAAEGISSRT AVFSDAELIL SSSAAAAAAG RHMPPPPVAA SAAESYVYSY  180
SHSSGGASDG SLQSLSGYNS NSKQTAADHL GAAAAAGYLQ QEQDPAAAAA AADALHCGPS  240
GAPAVVLPSV SSSSTLNSMA GLSPAATTTD EQCTNNCSSC SFHSGLEPWL ELGSTSGYYG  300
AALDELKWSD YVFDGGYGGQ PGQGIYGDSK DAVQFVDANA LSSSSWCLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150841
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150841_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0340160.0BT034016.1 Zea mays full-length cDNA clone ZM_BFc0036C19 mRNA, complete cds.
GenBankBT0353990.0BT035399.1 Zea mays full-length cDNA clone ZM_BFb0059D04 mRNA, complete cds.
GenBankBT0409890.0BT040989.1 Zea mays full-length cDNA clone ZM_BFc0162L22 mRNA, complete cds.
GenBankBT0675250.0BT067525.1 Zea mays full-length cDNA clone ZM_BFc0072I17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131823.10.0uncharacterized protein LOC100193196
TrEMBLB4FA780.0B4FA78_MAIZE; Transcription factor MYB46
STRINGGRMZM2G150841_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-72myb domain protein 86