PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G150729_P02 | ||||||||
Common Name | LOC100272342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 28923.4 Da PI: 7.8239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00017 | 163 | 202 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +R +++ +++ L++l+ + +K + a++L +A +Ik+L+ GRMZM2G150729_P02 163 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAATCIKHLH 202 6889999**********999.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.623 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-9 | 163 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-6 | 163 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MWNCSSLLLQ YGDDYAARCE SSSSPAGAVG LDRILAAEYG RFDSLDLSPP PPLHGLQAQT 60 LFAIHGSSEN CLGIGANPIY STEARPAFSQ LSFTQPAADT AAHYSMKWTA AGETATGGGG 120 SRLRGSKRLK TKTPATAQGP QHHGQRCSPK PTTSQSIKAP PCKRSQKLGD KITALQQLVS 180 PYGKTDTASV LHEAATCIKH LHEQIQILTA SYPELSSPAS QQDTGDEEGG ATGLRRRGLC 240 VASLSPAVVQ LVSAEAALGN RDTEDHWRWL GTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RLRGSKRLK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G150729 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G150729_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975058 | 0.0 | EU975058.1 Zea mays clone 466236 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020402931.1 | 0.0 | putative HLH DNA-binding domain superfamily protein isoform X4 | ||||
TrEMBL | A0A1D6JYE0 | 1e-171 | A0A1D6JYE0_MAIZE; Transcription factor bHLH112 | ||||
STRING | GRMZM2G150729_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 | Representative plant | OGRP14126 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 1e-21 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G150729_P02 |