PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G150680_P02 | ||||||||
Common Name | LOC100381651, ZEAMMB73_846054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 20973.1 Da PI: 6.1449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 115 | 160 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT eEd +l d v +G g+W+++a+ ++ gR +kqc++rw ++ GRMZM2G150680_P02 115 KGPWTMEEDSILRDMVMHHGEGRWSLVAQSLP-GRIGKQCRERWINH 160 79******************************.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-24 | 109 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.41 | 110 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.56E-18 | 110 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 114 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-16 | 115 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.44E-15 | 117 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MESDESAFLN NMLAPPMAPD KRTKRYFASS SHGHILFEQD LLATSSMQAS DAQLMGDPLE 60 ARSLVASIGM TPAGFEMPEG EILSRGYHAL GGTPVDIAPA PQPQIESSNK PTAFKGPWTM 120 EEDSILRDMV MHHGEGRWSL VAQSLPGRIG KQCRERWINH VDPNIKVKSL HLLFLSLLIC 180 MACSIQFLAA V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gvd_A | 6e-17 | 115 | 163 | 3 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbg_A | 8e-17 | 115 | 163 | 3 | 51 | MYB PROTO-ONCOGENE PROTEIN |
1mbh_A | 8e-17 | 115 | 163 | 3 | 51 | C-MYB |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19587 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G150680 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G150680_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061882 | 0.0 | BT061882.1 Zea mays full-length cDNA clone ZM_BFb0194A15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001167937.1 | 1e-118 | uncharacterized LOC100381651 | ||||
TrEMBL | C0HHS6 | 1e-117 | C0HHS6_MAIZE; Myb domain protein 118 | ||||
STRING | GRMZM2G150680_P01 | 1e-118 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 5e-20 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G150680_P02 |