PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G150680_P01 | ||||||||
Common Name | LOC100381651, ZEAMMB73_846054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 47137.6 Da PI: 5.8808 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 115 | 160 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT eEd +l d v +G g+W+++a+ ++ gR +kqc++rw ++ GRMZM2G150680_P01 115 KGPWTMEEDSILRDMVMHHGEGRWSLVAQSLP-GRIGKQCRERWINH 160 79******************************.***********997 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.7e-13 | 171 | 212 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd l++a+k +G++ W+tIa+ ++ g ++ +k++w++ GRMZM2G150680_P01 171 WTEEEDIVLIQAHKSFGSH-WSTIAKFLP-GWPENAIKNHWNST 212 *******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 109 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.41 | 110 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.91E-28 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 114 | 163 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 115 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.46E-14 | 117 | 161 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 164 | 214 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.491 | 167 | 217 | IPR017930 | Myb domain |
CDD | cd00167 | 8.02E-11 | 171 | 213 | No hit | No description |
Pfam | PF00249 | 5.1E-11 | 171 | 211 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MESDESAFLN NMLAPPMAPD KRTKRYFASS SHGHILFEQD LLATSSMQAS DAQLMGDPLE 60 ARSLVASIGM TPAGFEMPEG EILSRGYHAL GGTPVDIAPA PQPQIESSNK PTAFKGPWTM 120 EEDSILRDMV MHHGEGRWSL VAQSLPGRIG KQCRERWINH VDPNIKKNDI WTEEEDIVLI 180 QAHKSFGSHW STIAKFLPGW PENAIKNHWN STKRSLGSKR RLKKKKSQQA PPGQLSVLEE 240 YIRSLESDSS SAAPPAATSR PAIGRPRRAV HTSAVPEMEL HLSAPNNQDA PVRHQPRAIS 300 QGNPMLPDLN VSYDPEETHY MGYPMYDPAA APQLQLVSQE PRQATFTWLP FGGPRMALNG 360 EHASGPSSYD VGGSSGNAGY YSEAGPSNVG GSGGDGQADD DTTNNDDLDL ASREFFMPSC 420 DEVRLGLARF K |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-37 | 115 | 214 | 4 | 102 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-37 | 115 | 214 | 4 | 102 | C-Myb DNA-Binding Domain |
1msf_C | 4e-37 | 115 | 214 | 4 | 102 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.19587 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G150680 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G150680_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061882 | 0.0 | BT061882.1 Zea mays full-length cDNA clone ZM_BFb0194A15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001167937.1 | 0.0 | uncharacterized LOC100381651 | ||||
TrEMBL | C0HHS6 | 0.0 | C0HHS6_MAIZE; Myb domain protein 118 | ||||
STRING | GRMZM2G150680_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G09370.1 | 2e-37 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G150680_P01 |
Entrez Gene | 100381651 |