PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150327_P01
Common NameZm.133660
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 319aa    MW: 34203.4 Da    PI: 6.2463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150327_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12150195555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h  +Er RR+++N+ f+ L +++P       +K +K++ L  ++eY+++L+
  GRMZM2G150327_P01 150 HIVAERMRRQKMNHQFAALASMIPDI-----TKTDKVSLLGSTIEYVQHLR 195
                        8899*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16149208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9150194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-11150199No hitNo description
SuperFamilySSF474592.09E-15150209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.27251319IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSTASHEWL AELVGELDSI DAMTMEQLAK SLADELWDQP ATTTHHQEQQ QVELSDQRQQ  60
LTKTTGFPFL GDMSRRSYAE ADEGFLPTTA AISAGGNDSL FSFTGGKSKQ LSFASREPKH  120
ESNGGGTTAA GTPMESSKGG RRASSGVHEH IVAERMRRQK MNHQFAALAS MIPDITKTDK  180
VSLLGSTIEY VQHLRGRLKA LQEERRQSSS STGSAAESSP PLDARCCVGS PDDGGGVIPT  240
VEADVRGTTV LLRVVCREKK GALITVLKEL EKHGLSVVNT NVLPLAGSSL NITITARIED  300
GFSTAIELVN ALNAALKKN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150327
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150327_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9550430.0EU955043.1 Zea mays clone 1503655 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659077.10.0transcription factor bHLH18
TrEMBLA0A1D6KB410.0A0A1D6KB41_MAIZE; Transcription factor bHLH18
STRINGGRMZM2G150327_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Representative plantOGRP1298245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-25bHLH family protein