PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150262_P01
Common NameLOC100285144, ZEAMMB73_997660, Zm.79115
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 679aa    MW: 76677.4 Da    PI: 5.2609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150262_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07103126327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C +f++ G C  GdrC+F Hgp
  GRMZM2G150262_P01 103 MVPCYYFQK-GNCLKGDRCPFYHGP 126
                        789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.9811948IPR000571Zinc finger, CCCH-type
SMARTSM003560.00141947IPR000571Zinc finger, CCCH-type
PfamPF156633.6E-122175No hitNo description
PROSITE profilePS5010311.1315076IPR000571Zinc finger, CCCH-type
SMARTSM003560.35275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051100127IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6100126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5101125IPR000571Zinc finger, CCCH-type
PfamPF146080.26105125No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-4105126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MEVAAAAAGK PLTPEEEALR RSTDCVYFLA SPLTCKKGNE CDFRHSEGAR MNPRDCWYWL  60
NGSCLNPKCA FRHPPIDGLF GAPTSGLPPV SAHYGAYNLG KQMVPCYYFQ KGNCLKGDRC  120
PFYHGPQTAS NDLAEQAAKV SSFPLEPSQA QNNEEAVAPN NSTQQEARMT ENRTSIHVSK  180
SGVGATPADV ASNALKPGTN FEQAPSNTLA AKKSSTTEDH PMHYQNQVPV EIDPVKDWNQ  240
NFEVSPTDYL PQDSREADDI LGESSPGFDV LVDNDVDVAE DFARDMYPVE DYEYVTSDFD  300
ARAHHESEQF NDGMGVNGRI GQYDGYERKR RRSSSERNLD RHYHPDGRFL HRELDRGEID  360
GSDLRHQLRR RRINGPSTTI SPERANGDRH GRDEPYRERA HGGHHTYRDR YQGPRGSNLS  420
SRLQARIKLP RRSPDRVDTR FEDERDRRRF RDMFSPMRRM DFHGGRHQEA GHNQERGHRK  480
LSELVSTVRH ADGLSARRDA VGSTHFAARR NLGEPRKANG LVESEASLDF EGPKPLSVIL  540
QRKREAAQGN NYEKFAEVAV TQTGSLDETE KKSCDNVTRF ADCKSGSGDE EYKEQDHILV  600
DAHRQSSDHG DKFEAGYAAE VDAEGKQEAD DYDQREGESD DYETFEGHDY KSEDENVYQD  660
DEDFDDNDDF ARKVGVLLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327331RKRRR
2327332RKRRRS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150262
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150262_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9710090.0EU971009.1 Zea mays clone 355753 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151510.10.0zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLB6U1940.0B6U194_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGGRMZM2G150262_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Representative plantOGRP24551220
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]