PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G150011_P01
Common NameLOC100284341
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 376aa    MW: 40477.7 Da    PI: 7.2968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G150011_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05191210120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C  C+k+F+r  n++ H+
  GRMZM2G150011_P01 191 FSCAVCNKTFNRFNNMQMHM 210
                        89*****************9 PP
2zf-C2H213.60.0002281303123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C  Cgk+F  + + ++H +++
  GRMZM2G150011_P01 281 YACRRCGKRFAVRGDWRTHEKNC 303
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-5186212No hitNo description
PROSITE profilePS5015710.055191218IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-5191210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.64191213IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
SMARTSM00355230244276IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.12E-6267301No hitNo description
Gene3DG3DSA:3.30.160.601.3E-6267301IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704281301IPR007087Zinc finger, C2H2
SMARTSM0035558281301IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0007015developmental stageradicle emergence stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MHSYRAMHPY THHSYQHHTA AVAPTKHGHG HGHGHGHGDE EDDQSMLLLS LWPPGHHHGN  60
AAASSACSSP PICASATTTS MAAAASSPAS YPWLTHQSLY NNAGCGGGSS SSSHSSFLFQ  120
EHQQEPGVSI SLSIAPPCSN NAASSCGGGG FAAPPAAPST VTTTVTPGGG QVPRQYWIPS  180
AAEILVGSTQ FSCAVCNKTF NRFNNMQMHM WGHGSQYRKG SESLRGAITV GTAPPASLMR  240
LPCYCCAEGC RNNIEHPRAR PLKDFRTLQT HYRRKHGARP YACRRCGKRF AVRGDWRTHE  300
KNCGKLWFCV CGSDFKHKRS LKDHVRSFGG GHAPHLVESV AVEDEEEEDD DHDDDDLQTF  360
DDNGGAGADP SDMVVI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G150011
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G150011_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150708.10.0zinc finger, C2H2 type family protein
SwissprotQ9FX681e-97ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLB6TSL10.0B6TSL1_MAIZE; Zinc finger, C2H2 type family protein
STRINGGRMZM2G150011_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.12e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]