PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149958_P01
Common Namepco092156a
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 297aa    MW: 30975.3 Da    PI: 5.9234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149958_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-101764245
                       SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                       g+WT e ++ + +av+ +Gg+     +W++ a+ +  g+t+++++ ++ 
  GRMZM2G149958_P01 17 GSWTREQEKAFENAVATMGGEedgdaRWEKLAEAVE-GKTPEEVRRHYE 64
                       79**********************************.**********95 PP

2Myb_DNA-binding39.81e-12124168347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  GRMZM2G149958_P01 124 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 168
                        6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.2211471IPR017884SANT domain
SMARTSM007171.7E-71569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-51764IPR009057Homeodomain-like
PfamPF002492.3E-81764IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-101873IPR009057Homeodomain-like
CDDcd001674.34E-81967No hitNo description
PROSITE profilePS5129416.605117173IPR017930Myb domain
SuperFamilySSF466891.94E-16119174IPR009057Homeodomain-like
SMARTSM007179.3E-11121171IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.7E-17121171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.6E-11124167IPR009057Homeodomain-like
CDDcd001673.10E-10124169No hitNo description
PfamPF002493.3E-11124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAVDEASSSG GGEEGCGSWT REQEKAFENA VATMGGEEDG DARWEKLAEA VEGKTPEEVR  60
RHYELLVEDV DGIESGRVPL PAYAADGAAE EGGGGGKKGS GGGGTHGDKG SAKSAEQERR  120
KGIAWTEDEH RLFLLGLEKY GKGDWRSISR NFVISRTPTQ VASHAQKYFI RLNSMNRERR  180
RSSIHDITSV NNGDPSTAQG PITGQTNGQA ANPGKPSKQS PQPANTPPGV DAYGTTIGQP  240
VGGPLVSAVG TPVTLPVSAP PHLAYGMRAP VPGAVVPGAP VNIAPMPYPM PPPPSHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-17687277RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102GGKKGSGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.235130.0embryo| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149958
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149958_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548090.0BT054809.1 Zea mays full-length cDNA clone ZM_BFb0071C23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146181.10.0uncharacterized LOC100279751
SwissprotQ9FNN61e-101SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A3L6G2V40.0A0A3L6G2V4_MAIZE; Transcription factor SRM1
TrEMBLB7ZZR70.0B7ZZR7_MAIZE; Duplicated homeodomain-like superfamily protein
TrEMBLK4JBP30.0K4JBP3_MAIZE; MYB-type transcription factor (Fragment)
STRINGGRMZM2G149958_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-85MYB family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]