PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G149940_P02 | ||||||||
Common Name | LOC100286038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 449aa MW: 49198.8 Da PI: 6.463 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.6e-15 | 316 | 411 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k lt+sdv++ gr+vlpkk ae + + + + l + d e +W++k++y ++ks++y+l+ + eFvk +gL+++D++++++++ GRMZM2G149940_P02 316 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPVVWNFKYRYwpNNKSRMYILE-STGEFVKRHGLQAKDILIIYRNK- 403 789******************999886432..34556777775555*********887888888888.9*******************654. PP SEE..EEE CS B3 88 sefelvvk 95 +++++v + GRMZM2G149940_P02 404 KSGRYVAR 411 77766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-24 | 306 | 416 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-17 | 312 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-9 | 314 | 416 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.614 | 314 | 416 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-11 | 316 | 411 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.50E-19 | 318 | 409 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MANANGSSTG AGHSDLVRAI SHEQHQAFMA SVPRAAPGGV NVHHQQHFHQ YPAGLIPAPV 60 ALPVHAPVSS QTSPYSAQIA VPPPPPPLIA SPDHRLHSLP PTGCYQLDYS PYGNAAAPSQ 120 QHTSAIRGFA DWGTHSNALM SLAHATSFGN NGSSNINNNG LLHQNLSPYT THTWTTTYVQ 180 RPYNTAVYAP ATMNMLQTPP FHSNSHEKES GAVFSNSFNM APSVTPTSPF QLMSPSSTNY 240 TSTQIFEETN NLEMSSYGVM ILQDTSRVFG GGDNESNNSE EPDPKPAVEM EDLNQGNDHT 300 SNKTANCQDY RMVLRKDLTN SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPV 360 VWNFKYRYWP NNKSRMYILE STGEFVKRHG LQAKDILIIY RNKKSGRYVA RAVKAEDIAP 420 PECECVEAGN PREECGFSVS PSINKKIIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 3e-33 | 304 | 410 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 3e-33 | 304 | 410 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.98834 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G149940 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G149940_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043138 | 0.0 | BT043138.2 Zea mays full-length cDNA clone ZM_BFc0107M18 mRNA, complete cds. | |||
GenBank | JX469973 | 0.0 | JX469973.1 Zea mays subsp. mays clone UT3236 ABI3VP1-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152398.1 | 0.0 | uncharacterized protein LOC100286038 | ||||
TrEMBL | A0A1D6DTG4 | 0.0 | A0A1D6DTG4_MAIZE; B3 domain-containing transcription factor LEC2 | ||||
STRING | GRMZM2G149940_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11817 | 28 | 35 | Representative plant | OGRP788 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 1e-36 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G149940_P02 |