PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149940_P01
Common NameLOC100286038
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 439aa    MW: 48088.4 Da    PI: 6.463
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149940_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3469.2e-15306401395
                        EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk +gL+++D++++++++ 
  GRMZM2G149940_P01 306 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPVVWNFKYRYwpNNKSRMYILE-STGEFVKRHGLQAKDILIIYRNK- 393
                        789******************999886432..34556777775555*********887888888888.9*******************654. PP

                        SEE..EEE CS
                 B3  88 sefelvvk 95 
                        +++++v +
  GRMZM2G149940_P01 394 KSGRYVAR 401
                        77766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-24296406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17302400IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.614304406IPR003340B3 DNA binding domain
SMARTSM010192.0E-9304406IPR003340B3 DNA binding domain
PfamPF023621.2E-11306401IPR003340B3 DNA binding domain
CDDcd100175.06E-19308399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006354anatomyear floret
PO:0009074anatomystyle
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MANANGSSTG AGHSDLVRAI SHEQHQAFMA SVPRAAPGGV NVHHQQHFHQ YPAGLIPAPV  60
ALPVHAPVSS QTSPYSAQIA VPPPPPPLIA SPDHRLHSLP PTGCYQLDYS PYGNAAAPSQ  120
QHTSAIRGFA DWGTHSNALM SLAHATSFGN NGSSNINNNG LLHQNLSPYT THTWTTTYVQ  180
RPYNTAVYAP ATMNMLQTPP FHSNSHEKES GAVFSNSFNM APSVTPTSPF QLMSPSSTNY  240
TSTQIFEETN NLEDTSRVFG GGDNESNNSE EPDPKPAVEM EDLNQGNDHT SNKTANCQDY  300
RMVLRKDLTN SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPV VWNFKYRYWP  360
NNKSRMYILE STGEFVKRHG LQAKDILIIY RNKKSGRYVA RAVKAEDIAP PECECVEAGN  420
PREECGFSVS PSINKKIIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-332944003109B3 domain-containing transcription factor LEC2
6j9c_D2e-332944003109B3 domain-containing transcription factor LEC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.988340.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149940
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149940_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0431380.0BT043138.2 Zea mays full-length cDNA clone ZM_BFc0107M18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152398.10.0uncharacterized protein LOC100286038
TrEMBLA0A1D6DTG40.0A0A1D6DTG4_MAIZE; B3 domain-containing transcription factor LEC2
STRINGGRMZM2G149940_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-36B3 family protein