PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G149756_P01
Common NameLOC103650960
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 357aa    MW: 36740.2 Da    PI: 6.2361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G149756_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78e-20144193255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  GRMZM2G149756_P01 144 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 193
                        7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.686144201IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22144202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-33144202IPR001471AP2/ERF domain
PfamPF008471.1E-13144193IPR001471AP2/ERF domain
SMARTSM003805.3E-36144207IPR001471AP2/ERF domain
PRINTSPR003671.2E-11145156IPR001471AP2/ERF domain
CDDcd000185.33E-15152203No hitNo description
PRINTSPR003671.2E-11167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MCFELADQRG PQGGGGAGWP AKRRAGGVQD EGAAAAAGMA MAAAGPGEVM SEYYQAQELS  60
TMVSALTHVV AGAPMGSAPA QRPMHGASGY YAHEMGSYRG APSPELAGSE LSSDTQSAGA  120
AAMEEHQSAA ALSSQEGPET PRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFETAEAA  180
ARAYDEAALR FRGSRAKLNF PEDARLYPAS TAGAAAPLAA AASTSPPVYS GGVQGSSDYL  240
RYHQMLLQAS TGSQGTLLPF YGGGMSNPYG GGAAMTGSYG GAGGGNTSGS LGSYYSFPAS  300
SVSVATVPSS TSSASGYYYS SPHDSQHSEA SAAADWNWES ALAWPDSSQY PPPPHTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23145201663ATERF1
3gcc_A2e-23145201663ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G149756
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G149756_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914071e-91FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674780.30.0ethylene-responsive transcription factor ERF115
TrEMBLA0A1D6N6B50.0A0A1D6N6B5_MAIZE; Ethylene-responsive transcription factor ABR1
STRINGGRMZM2G149756_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-21related to AP2 6