PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G149219_P01 | ||||||||
Common Name | LOC100277808, Z477F24.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 99aa MW: 11218.7 Da PI: 10.0582 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.4 | 2.6e-22 | 3 | 60 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 +Dgy+W+KYGqK +k+ + rsY+rC ++ C +kkkve +dp + i+Y g H+h GRMZM2G149219_P01 3 EDGYEWKKYGQKFIKNIQKMRSYFRCRHRLCGAKKKVEWHPRDPGgDLRIVYDGAHQH 60 7***************************************99985269********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 17.121 | 1 | 63 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-22 | 2 | 62 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.3E-23 | 2 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-20 | 2 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-20 | 3 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MPEDGYEWKK YGQKFIKNIQ KMRSYFRCRH RLCGAKKKVE WHPRDPGGDL RIVYDGAHQH 60 GPPPLAAPPG GHGQMQGGGA SDSNRYELCT QYFGGARSR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G149219 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G149219_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970633 | 1e-167 | EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348229.1 | 5e-70 | uncharacterized protein LOC100277808 | ||||
TrEMBL | A0A317YDJ2 | 6e-68 | A0A317YDJ2_MAIZE; Putative WRKY transcription factor 13 | ||||
TrEMBL | Q6JAD4 | 6e-68 | Q6JAD4_MAIZE; Putative DNA-binding protein | ||||
STRING | GRMZM2G149219_P01 | 1e-68 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10158 | 34 | 44 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 4e-12 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G149219_P01 |
Entrez Gene | 100277808 |
Publications ? help Back to Top | |||
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