PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G149040_P01 | ||||||||
Common Name | bZIP58, LOC100273514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 374aa MW: 40313.2 Da PI: 7.1835 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 3e-10 | 169 | 215 | 5 | 51 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l GRMZM2G149040_P01 169 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 215 9****************************************988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 8.1E-15 | 165 | 229 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 167 | 230 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.84E-11 | 169 | 220 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-9 | 169 | 223 | No hit | No description |
Pfam | PF00170 | 4.1E-9 | 169 | 213 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 8.38E-22 | 170 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAMPPKPGDP PQRSPARSPN LNLPCPLPPV PGGAPPPPQQ QPGAGLPPPR VGHHRRARSE 60 VAFRFPDDLP GGGGGGFDEI GSEDDLFSTF MDMDKIAGAD RDRAAETSSP PRPAKHRHSV 120 SFDGFGMGAA AGGPGGQQDG GGGMFGEVME AKKAMSSEQL SELAAIDPKR AKRIIANRQS 180 AARSKERKAR YITELERKVQ TLQTEATTLS AQLTLFQRDT TGLSAENAEL KIRLQAMEQQ 240 AQLRDALNDA LRQEVERLKI ATGEMSKSNN EHFNMGMQHV SYSPSFFQLS EQHTVQQHGN 300 IQLPHHFQQP PLNVPSHQML SHPNSLSNMV QQDSLGRLQG LDIGKGSMAV KSEAEVVVKS 360 EGSSISAGES NTTF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.155541 | 0.0 | ear| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G149040 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00303 | DAP | Transfer from AT2G40620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G149040_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041314 | 0.0 | BT041314.1 Zea mays full-length cDNA clone ZM_BFb0062I03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141404.1 | 0.0 | uncharacterized LOC100273514 | ||||
Swissprot | Q6S4P4 | 1e-137 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | B4FW26 | 0.0 | B4FW26_MAIZE; BZIP transcription factor | ||||
STRING | GRMZM2G149040_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40620.1 | 7e-84 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G149040_P01 |
Entrez Gene | 100273514 |
Publications ? help Back to Top | |||
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