PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G148940_P01 | ||||||||
Common Name | LOC103638664, ZEAMMB73_537531, Zm.23621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 673aa MW: 76583.5 Da PI: 8.7742 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.8 | 2.8e-21 | 84 | 176 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA GF +r+++s++++r+g ++++fvC keg+++++k ++k++r+r + r gC a+++v ++ ++w++tkl+leH+H + GRMZM2G148940_P01 84 FYNAYALCFGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHRKKKPVepSNKKKRKRLSIRDGCPAMMEVVRRGPDRWVITKLVLEHTHVI 175 9**************9999886665216789*********9998876667899999**********************************87 PP FAR1 90 a 90 + GRMZM2G148940_P01 176 V 176 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.6E-19 | 84 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-22 | 263 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.087 | 546 | 578 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.5E-7 | 548 | 577 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MEYSSSEDEG LVGDFIDAED NTFTKNIDQG TGVMASQIHG DDPSVGSMPP VIGNELLMAA 60 DVLAKNDEPR MGMEFDSDAA ARAFYNAYAL CFGFGIRVAR SRSERRKGVE VLVMKRFVCL 120 KEGHHRKKKP VEPSNKKKRK RLSIRDGCPA MMEVVRRGPD RWVITKLVLE HTHVIVSADR 180 AREVQLHRLS GKFQEHENQL QEVRRNVFGD TNAQGLFNYF KKMQSDNSSF FFSIQVDSKN 240 YVSNAVWVDA RARMAYTYFG DAVYFDTTCS QNENMLPFAA FTGVNHHGDT VVFGCALILD 300 RTESSYGWIF ETWLTAMDSR LPFSLTTDEG KGIAAAVAKV FPQCFHRLCR WRILSRCKKR 360 LTDARTRFPG LHEELKRCVN GCDTAVIFDM LWGSILDKYG LRDDNWLQSL YEIRHKWVPA 420 YLTSFFFAEL SLTHRVETVS KFYRNNFSSR VSLNTFISRF DQYIDGLYAS EAQKDITSFS 480 PEQFLKTDMV LEKQARSIYT RAAFETFQLE LVEAMQHYAV KVQDGSYMKY YVERNGDPPT 540 RHTVFYNVAE KKAWCECCRF AFSAILCRHV LSVFLLAGVI MLPEPCITKR WTKKAKSGPE 600 LIGLNVGNGS SSPDSVASRY NDLVRDAIKC AEKGTVSAGA FRVAKEVLRK AFMDIRGHGE 660 KLCKDALRSA SSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 126 | 140 | KKKPVEPSNKKKRKR |
2 | 127 | 139 | KKPVEPSNKKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23621 | 0.0 | root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G148940 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G148940_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659732.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | K7WA82 | 0.0 | K7WA82_MAIZE; FAR1-domain family sequence | ||||
STRING | GRMZM2G148940_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-119 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G148940_P01 |
Entrez Gene | 103638664 |