PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148723_P02
Common NameLOC100275686
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 616aa    MW: 67210 Da    PI: 7.56
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148723_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12461507455
                        HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  GRMZM2G148723_P02 461 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 507
                        799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-5160245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831457506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.77E-15460511No hitNo description
SuperFamilySSF474596.28E-19460524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10461507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18461520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16463512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MVMKMELEDD GALGGTAGTW TEEDRGLGAA VLGADAFAYL TKGGGAISEG LVSASLPDDL  60
QNKLQELVES ESPGTGWNYA IFWQLSRTKS GDLVLGWGDG CCREPRVGEV GAAASAGSDD  120
TKQRMRKRVL QRLHIAFGVA DEEDYAHGID QVTDTEMFFL ASMYFAFPRC AGGPGQAFAA  180
GIPLWVPNSE RKVFPANYCY RGFLANAAGF RTIVLVPFES GVLELGSMQH IAESSDTIQT  240
IRSVFAGTRG NKAAVQRHEG NGPAPPERSP SLAKIFGKDL NLGRPSVGVP KVDERIWEQR  300
SAGGGTSLLP SVQKGLQNFT WSQARGLNSH QQKFGNGVLI VSNEAGHRNN GAVDSPSTAQ  360
FQLQKVPQLQ KLQLQKLPVV QKTPQLGNQQ PMQTQVPRQI DFSAGSSSKP GVLVTRAAVL  420
DGESAEVDGL CKEEGAPPVI EDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  480
RAVVPNISKM DKASLLGDAI TYITDLQKKL KEMETERERL LESGMVDPRE RAPRPEVDIQ  540
VVQDEVLVRV MSPMENHPVK KVFQAFEEAE VRLGESKVTG NNNNGTVVHS FIIKCPGTEQ  600
QTREKVIAAM SRAMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-28455517264Transcription factor MYC2
5gnj_B6e-28455517264Transcription factor MYC2
5gnj_E6e-28455517264Transcription factor MYC2
5gnj_F6e-28455517264Transcription factor MYC2
5gnj_G6e-28455517264Transcription factor MYC2
5gnj_I6e-28455517264Transcription factor MYC2
5gnj_M6e-28455517264Transcription factor MYC2
5gnj_N6e-28455517264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442450RRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.769770.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148723
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148723_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549530.0BT054953.1 Zea mays full-length cDNA clone ZM_BFc0103E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146245.10.0uncharacterized LOC100279818
TrEMBLA0A1D6MEW50.0A0A1D6MEW5_MAIZE; Transcription factor bHLH3
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-69bHLH family protein