PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G148693_P02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 305aa MW: 34843.9 Da PI: 9.1962 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 101.6 | 2.9e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gklyey++ GRMZM2G148693_P02 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSPKGKLYEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 110.1 | 2.4e-36 | 128 | 213 | 15 | 100 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++e++kLk++ie++q+ ++hl+GedLesL+ keLqqLeqqLe+slk+iRs+K++l+ e+i+elqkke++lqeenkaL+k+l+e GRMZM2G148693_P02 128 GNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNPKELQQLEQQLESSLKHIRSRKSHLMAESISELQKKERSLQEENKALQKELAE 213 58********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.5E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.095 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.13E-44 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-35 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 17.761 | 127 | 217 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-30 | 129 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSP KGKLYEYATD 60 SRMDKILERY ERYSYAEKAL ISAESESESS KFEVKCLPLS VITITLYETA NISRPQNNWL 120 CPLAPCMGNW CHEYRKLKAK IETIQKCHKH LMGEDLESLN PKELQQLEQQ LESSLKHIRS 180 RKSHLMAESI SELQKKERSL QEENKALQKE LAERQKAVAS RQQQVQWDQQ THAQAQTSSS 240 SSSFMMRQDQ QGLPPPHNIC FPPLTMGDRG EELAAAAQQQ PLPGQAQPQL RIAGLPPWML 300 SHLNA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_B | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_C | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
3mu6_D | 3e-20 | 2 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2A |
6byy_A | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 7e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 6e-20 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.578 | 0.0 | ear| ovary| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G148693 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the floral meristem at very early stage of the spikelet (rice flower) development. Expressed in lemmas, paleas and lodicules from early to late stage of flower development. {ECO:0000269|PubMed:10945340}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G148693_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033167 | 0.0 | BT033167.1 Zea mays full-length cDNA clone ZM_BFb0107L06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105333.2 | 0.0 | zea apetala homolog 1 | ||||
Swissprot | Q6Q9I2 | 1e-127 | MAD15_ORYSJ; MADS-box transcription factor 15 | ||||
TrEMBL | A0A1D6FAE8 | 0.0 | A0A1D6FAE8_MAIZE; Agamous-like MADS-box protein AGL8 | ||||
STRING | GRMZM2G148693_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G148693_P02 |