PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148467_P01
Common NameZEAMMB73_884786, Zm.34902
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 450aa    MW: 47007.5 Da    PI: 9.2324
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148467_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.41.3e-40146222177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +CqvegC+  l++akeyhrrhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk++
  GRMZM2G148467_P01 146 RCQVEGCHLSLADAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDDAKRSCRRRLAGHNERRRKSN 222
                        6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33142208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206144221IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-38145224IPR004333Transcription factor, SBP-box
PfamPF031107.7E-32147220IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGCHATPAWV AYRLYFQQQH HQPPPPPPRF HFVLSPALND DSRAGSTARI AMEGNGGAGG  60
GSGSAAPPWD LAMHWAPAVV SSYPPQPLEL QQQELTCLKL GKRPACCWAG APGNQAAQVH  120
GNGGAGGAAA EGKRKDKAPA AAAVTRCQVE GCHLSLADAK EYHRRHKVCE AHSKAPRVVV  180
LGAEQRFCQQ CSRFHAISEF DDAKRSCRRR LAGHNERRRK SNASEAMARG VAHPHGVTAF  240
GHGGFLPSRG LVPAGSSPAA AGALSLLSSA RGSVAGASGP WLVTAAREDI PARSSAALDD  300
LIAENRAAAL LARQYFVSDR SPAPRRDFVA SSTAGCSLQQ QQHPPDHDHT AGWHPHPHPY  360
SGGGGGSCGG RYQYHHVAPP SAWHATTLDL MQPTASTTAA PATAGAALWP AVPERAGARS  420
SRSRSETKDG DASGCSGLDA WAPTGGARVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-301472201184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148467
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148467_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0546540.0BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305308.10.0SBP-transcription factor 21
SwissprotQ01JD18e-92SPL7_ORYSI; Squamosa promoter-binding-like protein 7
TrEMBLA0A1D6JD630.0A0A1D6JD63_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G148467_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.18e-37squamosa promoter binding protein-like 3