PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148220_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 337aa    MW: 39141.4 Da    PI: 10.1308
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148220_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73e-23959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskR+ g++KK +E+ +LCda++ vi+fs +g++yeyss
  GRMZM2G148220_P02  9 KKIENPTNRQVTFSKRQMGLFKKENEVAILCDAQIGVIVFSGSGRMYEYSS 59
                       68***********************************************96 PP
2K-box35.93.2e-13851411470
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                        +++  qe++++k+e + L+    +++ edL s s ++L +Leqq+e sl k+R +K 
  GRMZM2G148220_P02  85 QQKIVQEMTRMKDERNRLRMIMAQYMAEDLASFSAQDLSNLEQQIEFSLYKVRLRKI 141
                        68899**************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.422161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-26279IPR002100Transcription factor, MADS-box
CDDcd002653.16E-32276No hitNo description
PRINTSPR004043.0E-25323IPR002100Transcription factor, MADS-box
PfamPF003197.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-253859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1181140IPR002487Transcription factor, K-box
PROSITE profilePS512978.93985178IPR002487Transcription factor, K-box
PfamPF162056.7E-7251285IPR03244040S ribosomal protein S11, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRQMGLFK KENEVAILCD AQIGVIVFSG SGRMYEYSSP  60
PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN RLRMIMAQYM AEDLASFSAQ  120
DLSNLEQQIE FSLYKVRLRK IKERISLLPP RPRVQRGERS RSNSNPQRHG QSCSRSAHRS  180
RSERVVVLGG NEGTYFWQIV FAEHHLYPVV VMIEFYLILC DLTDFQAALI SDVHLFHSFI  240
YARLMCVLEL SSKKATKGNK PSKGRNRFWR NIGLGFKIPK EAIKGISNFL HDLDVLRLKD  300
ILCINVLQIK ANLMHDLGWC SEISYVNVGR RCLINDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-14160160Myocyte-specific enhancer factor 2B
1tqe_Q5e-14160160Myocyte-specific enhancer factor 2B
1tqe_R5e-14160160Myocyte-specific enhancer factor 2B
1tqe_S5e-14160160Myocyte-specific enhancer factor 2B
6c9l_A5e-14160160Myocyte-specific enhancer factor 2B
6c9l_B5e-14160160Myocyte-specific enhancer factor 2B
6c9l_C5e-14160160Myocyte-specific enhancer factor 2B
6c9l_D5e-14160160Myocyte-specific enhancer factor 2B
6c9l_E5e-14160160Myocyte-specific enhancer factor 2B
6c9l_F5e-14160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.120010.0meristem| pericarp| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148220
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148220_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9754250.0EU975425.1 Zea mays clone 490157 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6KJS60.0A0A1D6KJS6_MAIZE; Protein TRANSPARENT TESTA 16
STRINGGRMZM2G148220_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.32e-35MIKC_MADS family protein