PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148098_P01
Common NameLOC103625988, Zm.160524
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 639aa    MW: 70848.4 Da    PI: 5.5616
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148098_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-084024391954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  GRMZM2G148098_P01 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439
                        664559******************************88 PP
2BELL116.61.2e-37265336172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e+qelq+k +kL+ +l+eVd++Yk+y++ +q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  GRMZM2G148098_P01 265 EKQELQNKMVKLMAMLDEVDRKYKHYYHRMQLVMSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                        689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-55189334IPR006563POX domain
PfamPF075269.0E-49195332IPR006563POX domain
PROSITE profilePS5007112.001380443IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-27382452IPR009057Homeodomain-like
SMARTSM003894.8E-9383447IPR001356Homeobox domain
CDDcd000862.34E-12383444No hitNo description
SuperFamilySSF466899.84E-17384449IPR009057Homeodomain-like
PfamPF059202.8E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MATYYSSPDS ERDSQTMYST ESGNASYPVP SALGNFLYLN SASSGPYTEF NGIVQSQQNF  60
MELTGHPSAI SHDSSSNEAT NIGTSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHN  120
DDHSTAQLEF GMLNNHNSTS LPSASGQGLS LSLNTHILAP SYPYWSAKQD LLTPNSYQGD  180
DNRMKNMQSE ASQAIRNSKY LKAAQELLDE IVSVWKSVKQ KTDKGPSEAG KSDGKETDGG  240
TKSEGVSFDP QESGANTAAE LSTAEKQELQ NKMVKLMAML DEVDRKYKHY YHRMQLVMSS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQISVIR KKLGEDDDAS GKEGKLIRLR  360
YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYK EEIGEAELDS NSSSDNVQPN KDKPPSSEEK  480
DHKTSTSQVC QTSQLGESKA NIGGVVSFCG APAGGFHNDA NPDDSFMSLM LKAQRPGETD  540
GSGLLHDAVA HHSDESARFM AYHLTEFGRY GNNNVSLTLG LQHAENTQPG FPGVRDQDIY  600
NSTAPLNVTS TSSEYDSASQ IDQQRQLFEV SPLMHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16389446158Homeobox protein Meis1
4xrs_B4e-16389446158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.76960.0embryo| glume| pericarp| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148098
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148098_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644604.10.0BEL1-like homeodomain protein 7
RefseqXP_020393490.10.0BEL1-like homeodomain protein 7
TrEMBLA0A1D6GKJ40.0A0A1D6GKJ4_MAIZE; BEL1-like homeodomain protein 3
STRINGGRMZM2G148098_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-112BEL1-like homeodomain 6