PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G148022_P02 | ||||||||
Common Name | LOC100501397, ZEAMMB73_933782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 778aa MW: 84779.1 Da PI: 7.5194 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.8 | 2.9e-32 | 442 | 620 | 1 | 99 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el + GRMZM2G148022_P02 442 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIDELSADreegqpaaeaadatttepaeqvtstsY 533 689**************************************************************998655444444433333333333330 PP TCP 67 sssaseceaesssssasnsssg...................................................................... 88 g GRMZM2G148022_P02 534 ---------------------Gfaiggvagsfmphsvgaddvsgsgsgsgsgnvkslfpsssttsttptqdeyrgsppdllsrttssnqpqe 604 .....................13333444444444444444444444444455555555433333333333344444444444444444444 PP TCP 89 .....kaaksaakskk 99 ++ ++++++++ GRMZM2G148022_P02 605 lcltlQSTNNHHHQQQ 620 4444333333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52058 | 4.91E-12 | 22 | 94 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 3.1E-14 | 23 | 88 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF03634 | 2.2E-32 | 444 | 610 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.017 | 445 | 503 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 778 aa Download sequence Send to blast |
MSTLGNTVEG QRQSLDETRQ LLDQRNISGA IPAALGNAKS LKFLRLDHNR LKGPIPRELA 60 GLPNLGIVDF SNNDLCGAIP TDGAFQNIPR SSFLIMKKQA KILWLRLICV AFPTTYLLHL 120 VHLALANLVC FASCSPPIRA NAHMAHSELL LIVGSDCSTI RSELWWSGLS CSHVRLLQRS 180 SRPIKISRLW HLSVIHIVYE NLLRIKGSML YIYYVKRVMP CGSKVGKMDI GGGPEEDVIQ 240 NQYEFLIQRW GDLPLFSQRR GEVLTLAGDG EPYQVHGIGA KILYGERALG LYLAKHNNKE 300 STDMHPLKPD EMVDHLKHGL GKEGHVFTYI THEQGSAEVS TLKLEEDKNQ LSKGLDPWSN 360 PTAATSTLHY LLQEKERAQA HEQLQIYHQQ GFSYLQHRRR QQQQQQQPRA AGAGSDGVSS 420 GESTPVDALA TAFGSGRIVR SAAGRKDRHS KVCTARGLRD RRVRLAAHTA IRFYDVQDRL 480 GYDRPSKAVD WLIRNAKAAI DELSADREEG QPAAEAADAT TTEPAEQVTS TSYGFAIGGV 540 AGSFMPHSVG ADDVSGSGSG SGSGNVKSLF PSSSTTSTTP TQDEYRGSPP DLLSRTTSSN 600 QPQELCLTLQ STNNHHHQQQ QQQQIFSHVS PNHHGSMISV AGVQGWPEAH GQRMPPWHAP 660 ENSGAGDDGR GAAGNGDSYM FGVPGPRQGL DHLQGQLIFS QGEPLQSSGG GWPSSSARAW 720 LDPLVAIHQH QPSTMSGQVG FGHLVGGAGS GFMGFLAPPA QRLQLQSEDE QGSEAMRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-19 | 450 | 503 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-19 | 450 | 503 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.37303 | 0.0 | ear| pollen |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G148022 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G148022_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085212 | 0.0 | BT085212.2 Zea mays full-length cDNA clone ZM_BFb0334P17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972181.1 | 0.0 | transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 1e-148 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A1D6GBE2 | 0.0 | A0A1D6GBE2_MAIZE; Transcription factor TCP4 | ||||
STRING | GRMZM2G148022_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 | Representative plant | OGRP14367 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-32 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G148022_P02 |