PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G147867_P01
Common NameLOC100192914
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 420aa    MW: 45153.1 Da    PI: 8.4449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G147867_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.3e-49421672128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++  + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + 
  GRMZM2G147867_P01  42 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIR 132
                        79***************************.89***************7767789************************************** PP

                NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++ +glkktLvfy+g+apkg++++W+m+eyrl
  GRMZM2G147867_P01 133 GENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 167
                        *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-5740191IPR003441NAC domain
PROSITE profilePS5100554.68741191IPR003441NAC domain
PfamPF023651.6E-2443167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MSRDLEDGHG AVGNVIAAAA AAGGEAVGAG EAGDAHDNDV VMPGFRFHPT EEELIEFYLR  60
RKVEGKRFNV ELIAFLDLYR FDPWELPAMA VMGGKEWFFY VPRDRKYRNG DRPNRVTASG  120
YWKATGADRM IRGENNRPIG LKKTLVFYSG KAPKGVRSSW IMNEYRLPPP PTDADPLIPK  180
SEISLCRVYK RSGIDDGHGQ SSSSTQASSA RRRISSRTGG VPTTAVQHGS TPSSMPLSPT  240
PQQLSSFHPL QGECSSASPP EPIMDQVAVT VHRASPQLLP HRHRPRPCPY APVMATVSAA  300
EAAPQLAHAA TAHASTYSLF NMAAAAAAPM AASSRSTIDE LTTLVAPTQA YANLSAATTG  360
GHLLPLLTPP PPPMLQMTPL GALPIVAPPL SSSVADKLSS WDWNPIPDTT DRDYNPSGFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-544319219166NO APICAL MERISTEM PROTEIN
1ut4_B3e-544319219166NO APICAL MERISTEM PROTEIN
1ut7_A3e-544319219166NO APICAL MERISTEM PROTEIN
1ut7_B3e-544319219166NO APICAL MERISTEM PROTEIN
3swm_A5e-544319222169NAC domain-containing protein 19
3swm_B5e-544319222169NAC domain-containing protein 19
3swm_C5e-544319222169NAC domain-containing protein 19
3swm_D5e-544319222169NAC domain-containing protein 19
3swp_A5e-544319222169NAC domain-containing protein 19
3swp_B5e-544319222169NAC domain-containing protein 19
3swp_C5e-544319222169NAC domain-containing protein 19
3swp_D5e-544319222169NAC domain-containing protein 19
4dul_A3e-544319219166NAC domain-containing protein 19
4dul_B3e-544319219166NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G147867
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G147867_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0604780.0BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001159135.10.0uncharacterized protein LOC100192914
TrEMBLC0HDS20.0C0HDS2_MAIZE; NAC domain-containing protein 35
STRINGGRMZM2G147867_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28263787
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-90NAC domain containing protein 35