PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G147685_P01 | ||||||||
Common Name | Zm.12852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 624aa MW: 63407.3 Da PI: 8.7232 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 380 | 425 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llP++ p K +Ka+i+ +Av YIk L+ GRMZM2G147685_P01 380 IFTERERRKKMKNMFSTLHALLPQL---P-DKADKATIVGEAVTYIKTLE 425 557*********************7...3.9****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.459 | 374 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-14 | 378 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-14 | 379 | 438 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.46E-12 | 379 | 429 | No hit | No description |
SMART | SM00353 | 5.3E-9 | 380 | 430 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 382 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MSQEGANLPQ EVVGSHDQAT APHGSIPAPA DSNPSSVSNL ASAVNNGGSS ECASPAVLSA 60 GEDNNAASSK TASPAVLSAG EDNNAASSKT ASPAVLHAAD DNNAASKIAG PAVLLAGEEN 120 KAKLKLASPA SLLAGEEKGN NADEFKLASP RMLHDCDDNN AGSHAGVRNC NAAQSKLANP 180 AVLHAGDDKK GGSKIAGPEV PHASVTSTTG SKLNGPAALH AGNDNDSGGS RLPNPAVLHA 240 SKDMDNNAGR PKFASPVLLH AGEDNKARTK LAIQAGGGGN AGAGSSRLTR SAALHAGKDN 300 GAGSKPAIQV VPRLHAGGKD NNAGSFKAAR PSAADSGESN AKEGKSNVAG EQRAREAGVG 360 CGGGKGNAAA VEDVDHDLHI FTERERRKKM KNMFSTLHAL LPQLPDKADK ATIVGEAVTY 420 IKTLEGTVQK LEKLKLERKR ALAAQQQLMA GAGSNRASSA RHPAPAPSSP SSSSREANVA 480 DMVHGWHAQQ AAANKALAAE AGAGGSSSAA ASLPRGAVPF PAPAAGFQTW SGQNVVVSVA 540 SNEAYINLHS PRQPAGTLTK ALFVLERHRI DVVTTTISTQ DGFHMYGIHA RVNSASASAR 600 FPENLCAEDR FKLAVSEMLQ LINI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.12852 | 0.0 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G147685 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G147685_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087274 | 0.0 | BT087274.2 Zea mays full-length cDNA clone ZM_BFb0025H05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001335984.2 | 0.0 | Opaque11 | ||||
TrEMBL | A0A1D6EAS7 | 0.0 | A0A1D6EAS7_MAIZE; Transcription factor bHLH95 | ||||
STRING | GRMZM2G147685_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2005 | 36 | 91 | Representative plant | OGRP1226 | 15 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 7e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G147685_P01 |