PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G146380_P01 | ||||||||
Common Name | LOC103627335, Zm.143786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 25667.1 Da PI: 7.1635 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 35.5 | 3e-11 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 +kktLvfy+grap+g kt Wvmheyrl GRMZM2G146380_P01 1 MKKTLVFYTGRAPRGGKTGWVMHEYRL 27 8************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 21.631 | 1 | 64 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-5 | 1 | 27 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-15 | 1 | 64 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MKKTLVFYTG RAPRGGKTGW VMHEYRLQGK HAAAATSSSL VVPSSVRAGA SSKDEWVLCR 60 VFKKSIEPPS VPGSKRSSSV ACMGTEGTGV GVGPSSMSTE DDFAACAALP PLMDVSGGGA 120 NMSLSAAAAA AAASIELTPP AAPAPHVTCF SNAPLEGQFL NPPFLLPSAA AAADHIALAA 180 SASPFLASMM MQQQAQYAGD AGVVHGDGLL QGAGGWYGKL AGERERLSGG GVPAEISSTR 240 HCMDHEASFW GF |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G146380 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G146380_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX428484 | 0.0 | JX428484.1 Zea mays subsp. mays clone pUT3081 NAC30 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394166.1 | 1e-180 | NAC domain-containing protein 92 isoform X2 | ||||
TrEMBL | K0DCP5 | 0.0 | K0DCP5_MAIZE; NAC30 NAC type transcription factor (Fragment) | ||||
STRING | GRMZM2G146380_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 1e-20 | NAC domain containing protein 46 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G146380_P01 |
Entrez Gene | 103627335 |