PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G146286_P03 | ||||||||
Common Name | pco107514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NF-YB | ||||||||
Protein Properties | Length: 281aa MW: 31723.5 Da PI: 5.8644 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 65.7 | 9.4e-21 | 3 | 73 | 15 | 85 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ ++ al++lGf +y+e++ + GRMZM2G146286_P03 3 KIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVIKALSDLGFREYIEEVYA 73 89****************************************************************98754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.19E-30 | 2 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-17 | 3 | 59 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.0E-33 | 3 | 119 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE VCSREEKKTI APEHVIKALS 60 DLGFREYIEE VYAAYEQHKL DTLDSPKAGK FTGIEMTEEE AVAEQQRMFA EARARMNNGA 120 PKPKETEQEP PQQPQAQPQL QLHTEPQQPV QSQVQLHSPT QHSLQPQVQL HPQPQQLPQV 180 QVHSQTQLHP QPQQPQVQVH PQLQQLPQLQ AHSQPPQPQV QIHPQPQQPP QVQLQSSVQQ 240 TSQPQPQVHL YNHRGGSQAQ LQPQLPGQLQ TQGQTGPGID S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-29 | 3 | 113 | 23 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.117885 | 0.0 | ear| silk| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G146286 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G146286_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035946 | 0.0 | BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds. | |||
GenBank | BT042253 | 0.0 | BT042253.1 Zea mays full-length cDNA clone ZM_BFb0180H13 mRNA, complete cds. | |||
GenBank | BT061307 | 0.0 | BT061307.1 Zea mays full-length cDNA clone ZM_BFb0133I20 mRNA, complete cds. | |||
GenBank | EU976670 | 0.0 | EU976670.1 Zea mays clone 986701 repressor protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141894.1 | 0.0 | uncharacterized LOC100274041 | ||||
Refseq | XP_008668142.1 | 0.0 | uncharacterized protein LOC100274041 isoform X1 | ||||
Refseq | XP_008668144.1 | 0.0 | uncharacterized protein LOC100274041 isoform X1 | ||||
Refseq | XP_008668147.1 | 0.0 | uncharacterized protein LOC100274041 isoform X1 | ||||
TrEMBL | A0A317Y575 | 0.0 | A0A317Y575_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A317Y868 | 0.0 | A0A317Y868_MAIZE; Protein Dr1 | ||||
TrEMBL | B4FFQ8 | 0.0 | B4FFQ8_MAIZE; CCAAT1-Dr1 transcription factor | ||||
TrEMBL | B4FYR5 | 0.0 | B4FYR5_MAIZE; Protein Dr1-like protein | ||||
STRING | GRMZM2G146286_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 4e-64 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G146286_P03 |
Entrez Gene | 100274041 |
Publications ? help Back to Top | |||
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