PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146286_P01
Common Namepco107514
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 301aa    MW: 33883 Da    PI: 5.6888
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146286_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB71.71.3e-221193385
              NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                       ++d  lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ ++ al++lGf +y+e++ +
  GRMZM2G146286_P01 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREEKKTIAPEHVIKALSDLGFREYIEEVYA 93
                       67999*************************************************************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-378139IPR009072Histone-fold
SuperFamilySSF471132.97E-3412140IPR009072Histone-fold
PfamPF008089.4E-201579IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREEKKTI APEHVIKALS DLGFREYIEE VYAAYEQHKL DTLDSPKAGK FTGIEMTEEE  120
AVAEQQRMFA EARARMNNGA PKPKETEQEP PQQPQAQPQL QLHTEPQQPV QSQVQLHSPT  180
QHSLQPQVQL HPQPQQLPQV QVHSQTQLHP QPQQPQVQVH PQLQQLPQLQ AHSQPPQPQV  240
QIHPQPQQPP QVQLQSSVQQ TSQPQPQVHL YNHRGGSQAQ LQPQLPGQLQ TQGQTGPGID  300
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B1e-321213312133Transcription Regulator NC2 beta chain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1178850.0ear| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146286
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146286_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0359460.0BT035946.1 Zea mays full-length cDNA clone ZM_BFb0089E11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141894.10.0uncharacterized LOC100274041
SwissprotP495921e-78NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A317Y8680.0A0A317Y868_MAIZE; Protein Dr1
TrEMBLB4FFQ80.0B4FFQ8_MAIZE; CCAAT1-Dr1 transcription factor
STRINGGRMZM2G146286_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Representative plantOGRP34491727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.41e-78nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]