PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G146018_P01
Common NameGRAS5, LOC103652243
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 492aa    MW: 52614.5 Da    PI: 4.9922
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G146018_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS196.12.2e-601184893374
               GRAS   3 elLlecAeavssgdlelaqalLarlsel....aspdgd.....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                        +lL++ A+av+s+d+  a+a+L+r+  +      p+       ++  la yf+++L++r+++++  +++a +p         + +aa+++++
  GRMZM2G146018_P01 118 DLLVAGARAVESRDTISASAILSRIDAIipgvGVPYNGschraAVDHLARYFAQGLRSRMSGECRPTADAPAP------LGRKWMAADRILQ 203
                        689**********************9985554233333333447778899************55444443333......36678999***** PP

               GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiT.gvgspesg.skeeleetgerLakfAeelgvp 175
                        e+sP+ kf+h+taNqaIle ++ + +vH++D+++++G+QW++L+  La   +    +R+T +v+ ++++ +++++ +t++rL++fA++lg+p
  GRMZM2G146018_P01 204 ELSPFAKFAHFTANQAILEGTADDAAVHVVDLNVGEGAQWASLMSDLARHGSRRKPFRLTeAVVTADADaDAHRMAATARRLSEFADSLGLP 295
                        ************************************************99999999****5455545558********************** PP

               GRAS 176 fefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnse.....sFlerfl 258
                        f++  l +++ edl  + ++++    +++V++     r +    sl+   + +  +v+ l+Pk+vv +e+e   a +n++     +F+  f 
  GRMZM2G146018_P01 296 FQYGSLRVRSDEDL--HGFATSCcSCSVVVSCDTTDIRSY---SSLT---KLLAGIVRILRPKLVVTTEEEllrAGRNHPgaaaiTFAGFFR 379
                        *****977766666..555555556678899988766666...3333...3666899**************54433344488899******* PP

               GRAS 259 ealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg 348
                        eal+++ a+++sl++ +  +        vEre lg+ i+++v + + +         +  + le  GF++ ++s++ ++q ++l   ++  g
  GRMZM2G146018_P01 380 EALQHFGAVLESLASCFRDAGygACLGLVEREALGPTIQDAVGQYQCA------GSVTGGASLELEGFRAREMSSFSVAQGRMLAGLFS--G 463
                        *************999865557788899**************988877......55666789**************************9..* PP

               GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                        + v + +g l l+Wk+rpL+svS+W+
  GRMZM2G146018_P01 464 FGVVHGDGRLALCWKSRPLTSVSVWT 489
                        *************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.77690471IPR005202Transcription factor GRAS
PfamPF035147.8E-58118489IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MGTMSYPCSP LIPFPTQHED MGSYLLWSPQ AVIPLENGVM CDGDAGSSPD HHQQQDHDEL  60
MNMLLQEANV LLLQDELSSG DPSSDGFDQR LLVGQGNGGL LLGLGVQEEV MEESSLGDLL  120
VAGARAVESR DTISASAILS RIDAIIPGVG VPYNGSCHRA AVDHLARYFA QGLRSRMSGE  180
CRPTADAPAP LGRKWMAADR ILQELSPFAK FAHFTANQAI LEGTADDAAV HVVDLNVGEG  240
AQWASLMSDL ARHGSRRKPF RLTEAVVTAD ADADAHRMAA TARRLSEFAD SLGLPFQYGS  300
LRVRSDEDLH GFATSCCSCS VVVSCDTTDI RSYSSLTKLL AGIVRILRPK LVVTTEEELL  360
RAGRNHPGAA AITFAGFFRE ALQHFGAVLE SLASCFRDAG YGACLGLVER EALGPTIQDA  420
VGQYQCAGSV TGGASLELEG FRAREMSSFS VAQGRMLAGL FSGFGVVHGD GRLALCWKSR  480
PLTSVSVWTP VW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3112449027380Protein SCARECROW
5b3h_A9e-3212449026379Protein SCARECROW
5b3h_D9e-3212449026379Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G146018
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G146018_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269680.0KJ726968.1 Zea mays clone pUT3669 GRAS transcription factor (GRAS5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676094.20.0nodulation-signaling pathway 2 protein
TrEMBLA0A060D5700.0A0A060D570_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G146018_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Representative plantOGRP8945915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.17e-29GRAS family protein