PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G145690_P01 | ||||||||
Common Name | Zm.41296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 735aa MW: 80270.6 Da PI: 6.5446 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.1e-20 | 18 | 73 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k GRMZM2G145690_P01 18 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 73 678899***********************************************998 PP | |||||||
2 | START | 161.3 | 7.3e-51 | 244 | 467 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 +a +a++el+++a+a+e +Wvk e +n d++ ++f++ ++ ++e +r++g+v+m + lv ++d++ +W+e ++ ka t GRMZM2G145690_P01 244 MATRAMDELIRMAQAGEHLWVKTGgrEVLNVDTYDSIFAKPDGsfrgpdVHVEGSRETGLVFMSAIGLVDMFMDSS-KWTELFPaivsKART 334 5789*******************9999999999999998877799*******************************.*************** PP EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtw 166 ++v+ +g + l lm+ el ++sp+vp R+f f+Ry+rq + g w+i+d+Svd++q ++ R+ +lpSg+li ++++g skvtw GRMZM2G145690_P01 335 VDVLVNGmggrsESLLLMYEELHVMSPVVPtREFCFLRYCRQIEHGLWAIADISVDQQQRDARfGAPPSRSCRLPSGCLIADMADGSSKVTW 426 ************************************************************999*99999*********************** PP EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 veh++ ++r+p h l+r lv sg+a+ga +w+a+lqr ce+ GRMZM2G145690_P01 427 VEHMEIEDRVPiHLLYRDLVLSGAAFGAHRWLAALQRACER 467 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.55E-20 | 7 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 13 | 81 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.058 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-19 | 16 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.35E-19 | 17 | 76 | No hit | No description |
Pfam | PF00046 | 3.2E-18 | 18 | 73 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 46.73 | 234 | 470 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.19E-31 | 235 | 468 | No hit | No description |
CDD | cd08875 | 1.68E-108 | 238 | 466 | No hit | No description |
SMART | SM00234 | 7.0E-39 | 243 | 467 | IPR002913 | START domain |
Pfam | PF01852 | 3.9E-43 | 244 | 467 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.6E-6 | 347 | 443 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.26E-20 | 497 | 727 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 735 aa Download sequence Send to blast |
MDFGDDVMDG GSDAQRRKKR YHRHTPRQIQ QLEAMFKECP HPDENQRMQL SRELGLEPRQ 60 IKFWFQNRRT QMKAQHERQD NCFLRAENDK IRCENIAMQE ALRNVICPTC GGPPVADDHF 120 DEQKLRMENA RLKEEASRFA FTIALAPGPA SLDGPAILPR SSFTFTSGDL DRVSSLTSKY 180 LGRPITQLPS AQALSMSSLD LSVGGLGGPS LDLDLLSGGS SGYPPFHLLP MAVSEMERPM 240 MAEMATRAMD ELIRMAQAGE HLWVKTGGRE VLNVDTYDSI FAKPDGSFRG PDVHVEGSRE 300 TGLVFMSAIG LVDMFMDSSK WTELFPAIVS KARTVDVLVN GMGGRSESLL LMYEELHVMS 360 PVVPTREFCF LRYCRQIEHG LWAIADISVD QQQRDARFGA PPSRSCRLPS GCLIADMADG 420 SSKVTWVEHM EIEDRVPIHL LYRDLVLSGA AFGAHRWLAA LQRACERCAC LATAGIMPHR 480 DIAAAGDISH RELLAVTPEG KRSMMKLSQR MVNSFCASLS ASQLHRWTTL SGPNDVGVRV 540 MVHRSTDPGQ PSGVVLSAAT SIWLPVPCDR AFAFVRDEHT RSQWDVLSHG NPVQEVSRIP 600 NGSHPGNCIS LLRGLNASQN SMLILQESCT DASGSLVVYA PIDIPAANVV MSGEDPSAIP 660 LLPSGFSILP DGRPGASSSR AGQAPSAGSL VTVAFQILVS SLPSAKLNAE SVATVNSLIS 720 TTVEQIKAAL NCASH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.38765 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G145690 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G145690_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728523 | 0.0 | KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001310555.1 | 0.0 | uncharacterized protein LOC100502181 | ||||
Swissprot | Q69T58 | 0.0 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | G2J5S8 | 0.0 | G2J5S8_MAIZE; Homeodomain leucine zipper family IV protein | ||||
STRING | GRMZM2G145690_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2912 | 37 | 70 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G145690_P01 |