PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G145554_P01 | ||||||||
Common Name | WRKY28, ZEAMMB73_815285, Zm.127024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 359aa MW: 39228.3 Da PI: 6.7978 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.4 | 5.2e-32 | 207 | 264 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt ++C vkk+vers +dp++v++tYeg+H+h+ GRMZM2G145554_P01 207 EDGYRWRKYGQKAVKNSPYPRSYYRCTAPKCGVKKRVERSYQDPSTVVTTYEGQHTHH 264 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-33 | 191 | 266 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-28 | 199 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.859 | 201 | 266 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-37 | 206 | 265 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-25 | 207 | 264 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MSSGVRSGGG GDHHGVHHQH GHGHLAGADD GAEYAFYSND MESFFFNQPA SADVNNGGSR 60 TGADELTMPP YSSVTDYLQG FMDMDPSGLA RHLDAPCLLA EDAPLKHELS VDVSYDSQGT 120 SGAPGDGAAA MHTPNSSVSL SSSDREGEGQ LRRCRKGRPK AEDDAEGDEK DQEDGENSTK 180 ANRSKKKAEK RQPRVAFLTK SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTAPKCGVK 240 KRVERSYQDP STVVTTYEGQ HTHHSPASFR AGGAHLFMPN AHALPPQHLM LPSSFRPADL 300 MGMVHPVSMG ANLSMFLPTM PPHMPSPASR AHPLQQQQHQ FTDYALLQDL FPSTMPNNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-29 | 199 | 267 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-29 | 199 | 267 | 10 | 78 | Probable WRKY transcription factor 4 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G145554 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G145554_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726812 | 0.0 | KJ726812.1 Zea mays clone pUT3168 WRKY transcription factor (WRKY28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001347962.1 | 0.0 | uncharacterized protein LOC100280248 | ||||
TrEMBL | A0A3L6DT74 | 0.0 | A0A3L6DT74_MAIZE; Putative WRKY transcription factor 28 | ||||
TrEMBL | K7V3N0 | 0.0 | K7V3N0_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G145554_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 1e-46 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G145554_P01 |