PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G145554_P01
Common NameWRKY28, ZEAMMB73_815285, Zm.127024
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 359aa    MW: 39228.3 Da    PI: 6.7978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G145554_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.2e-32207264259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCt ++C vkk+vers +dp++v++tYeg+H+h+
  GRMZM2G145554_P01 207 EDGYRWRKYGQKAVKNSPYPRSYYRCTAPKCGVKKRVERSYQDPSTVVTTYEGQHTHH 264
                        8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33191266IPR003657WRKY domain
SuperFamilySSF1182901.28E-28199266IPR003657WRKY domain
PROSITE profilePS5081130.859201266IPR003657WRKY domain
SMARTSM007744.4E-37206265IPR003657WRKY domain
PfamPF031064.4E-25207264IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSSGVRSGGG GDHHGVHHQH GHGHLAGADD GAEYAFYSND MESFFFNQPA SADVNNGGSR  60
TGADELTMPP YSSVTDYLQG FMDMDPSGLA RHLDAPCLLA EDAPLKHELS VDVSYDSQGT  120
SGAPGDGAAA MHTPNSSVSL SSSDREGEGQ LRRCRKGRPK AEDDAEGDEK DQEDGENSTK  180
ANRSKKKAEK RQPRVAFLTK SEVDHLEDGY RWRKYGQKAV KNSPYPRSYY RCTAPKCGVK  240
KRVERSYQDP STVVTTYEGQ HTHHSPASFR AGGAHLFMPN AHALPPQHLM LPSSFRPADL  300
MGMVHPVSMG ANLSMFLPTM PPHMPSPASR AHPLQQQQHQ FTDYALLQDL FPSTMPNNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-291992671078Probable WRKY transcription factor 4
2lex_A6e-291992671078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G145554
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G145554_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268120.0KJ726812.1 Zea mays clone pUT3168 WRKY transcription factor (WRKY28) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001347962.10.0uncharacterized protein LOC100280248
TrEMBLA0A3L6DT740.0A0A3L6DT74_MAIZE; Putative WRKY transcription factor 28
TrEMBLK7V3N00.0K7V3N0_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G145554_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-46WRKY DNA-binding protein 28