PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G145041_P02 | ||||||||
Common Name | Zm.5979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 92aa MW: 10615 Da PI: 7.3538 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.3 | 1.7e-08 | 59 | 85 | 1 | 28 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r +WT+eE+ ++++a k++G W+ I GRMZM2G145041_P02 59 REKWTEEEHGKFLEALKLYGRS-WRQIQ 85 789*****************55.*9995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.57E-7 | 49 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.3 | 54 | 92 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-7 | 57 | 85 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-6 | 59 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-6 | 59 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MESMAQERDA LDSPALSIDK RLRSDAVESP LVDDATQPKE GADGYPVKVR KPYTITKQRE 60 KWTEEEHGKF LEALKLYGRS WRQIQGACRL YM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.5979 | 1e-143 | ear| endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G145041 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G145041_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067765 | 1e-141 | BT067765.1 Zea mays full-length cDNA clone ZM_BFc0156C11 mRNA, complete cds. | |||
GenBank | EU956978 | 1e-141 | EU956978.1 Zea mays clone 1579341 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728316 | 1e-141 | KJ728316.1 Zea mays clone pUT6597 MYB-related transcription factor (MYBR96) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146835.1 | 2e-52 | uncharacterized LOC100280442 | ||||
TrEMBL | A0A060D2R4 | 2e-52 | A0A060D2R4_MAIZE; MYB-related transcription factor (Fragment) | ||||
TrEMBL | B6SW63 | 2e-52 | B6SW63_MAIZE; Protein REVEILLE 7 | ||||
STRING | GRMZM2G145041_P01 | 4e-53 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 2e-19 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G145041_P02 |