PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G144346_P01
Common NameCOL2, LOC103643889
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 454aa    MW: 50222.5 Da    PI: 5.884
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G144346_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071760339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                       +r C+ + + +++++C  ++ +lC++C ++ H+        H+v
  GRMZM2G144346_P01 17 ARSCDSCMRRRARWHCPADNAFLCQSCDVSVHSAnplarrhHRV 60
                       678*****************************668888886655 PP
2CCT63.94.9e-22367410144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr++R+F KkirYe+RK +Ae+RpR+KGrFvk++
  GRMZM2G144346_P01 367 REARVSRYREKRRRRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 410
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.9E-81562IPR000315B-box-type zinc finger
PROSITE profilePS501199.9971562IPR000315B-box-type zinc finger
PfamPF006434.8E-61759IPR000315B-box-type zinc finger
CDDcd000213.75E-111862No hitNo description
PfamPF062034.3E-17367409IPR010402CCT domain
PROSITE profilePS5101715.934367409IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MTNAGAATGA ALGARTARSC DSCMRRRARW HCPADNAFLC QSCDVSVHSA NPLARRHHRV  60
RLPSASCSSP PRDPDAPTWL HGLKRRPRTP RSKPGGSNKH EAAPSSIAAA ASAAVPDLEA  120
EAEAEAEESG SGILGDNDDD HGFQDDDENL LYCVPVFDPM LAEFYNPVAD EGEQKPACLM  180
LPLVETSPEF ASGGLAEADG LSGFDVPDMD LASFAADMES LLMGVDDGFD DLGFLDEQKP  240
QVNADVDLEA MAAPEPERED KKRKRDGFDY LGFLDEEKPQ VNADVDLEAM VAPEPEREDK  300
KRKRTDMILK LNYEGVIASW VRDGGSPWYH GERPHLDDPY ELWLEFPATG SRGLFGGTMT  360
AVTGGEREAR VSRYREKRRR RLFAKKIRYE VRKLNAEKRP RMKGRFVKRT TLPPLPRPPP  420
PSQQQQKKKQ LPRSLPHVGM VLAPPPGADG RFRF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKRRPRT
2299304KKRKRT
3376381KRRRRL
4378393RRRLFAKKIRYEVRKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G144346
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G144346_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278440.0KJ727844.1 Zea mays clone pUT5888 C2C2-CO-like transcription factor (COL2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665284.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A060D1Z10.0A0A060D1Z1_MAIZE; C2C2-CO-like transcription factor (Fragment)
STRINGGRMZM2G144346_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-49B-box type zinc finger protein with CCT domain