PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G144275_P04
Common NameLOC100285547
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 354aa    MW: 37460.1 Da    PI: 5.4589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G144275_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09167214455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  GRMZM2G144275_P04 167 SHSLAERVRREKISQRMKFLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 214
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.2E-17161232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-10161218No hitNo description
PROSITE profilePS5088815.123163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-17163231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDSDYVASLL MGMGSSAPAL DFAALDAGFL ETLCGGGGGL FGVSGVAAGA GCGGVSPEGS  60
SVSDPAWARA RGDDNVRKRK APPTGSAGGK EACPGKAAEA KGPDGKRCRV GGSDSPVKPK  120
VEEVAASDAS VELKAQKKGK GKTAKPAVEP PKDYVHVRAR RGQATDSHSL AERVRREKIS  180
QRMKFLQDLV PGCNKVVGKA LMLDEIINYV QSLQQQVEFL SMKLATVNPQ LDFSNLSTLL  240
HKDMYQPCGP SANSVFPLES DGAAFPFCDQ ADLFHSFGSG SAAMEDQCSL SLLDTALPHA  300
ANPQFAFQKQ QRDFWEDGLQ NALPTGSEQR QEEDGLLVPN FDGQLHADQT KVEF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.946210.0aerial organ| cell culture| endosperm| pericarp| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G144275
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G144275_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355480.0BT035548.1 Zea mays full-length cDNA clone ZM_BFb0068P18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151910.10.0BHLH transcription factor
SwissprotQ9CAA99e-53BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A1D6I7X90.0A0A1D6I7X9_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G144275_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]