PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143765_P01
Common NameLOC100191937, WRKY62
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 496aa    MW: 52619 Da    PI: 7.9339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143765_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.5e-32230286259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  GRMZM2G143765_P01 230 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 286
                        8**************************************99.***************8 PP
2WRKY106.71.2e-33386444159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe
  GRMZM2G143765_P01 386 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERCSSDPKAVITTYEGKHNHE 444
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28226288IPR003657WRKY domain
SuperFamilySSF1182902.48E-25228288IPR003657WRKY domain
SMARTSM007742.5E-34229287IPR003657WRKY domain
PfamPF031061.5E-24230286IPR003657WRKY domain
PROSITE profilePS5081123.192230288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37372446IPR003657WRKY domain
SuperFamilySSF1182901.7E-29378446IPR003657WRKY domain
PROSITE profilePS5081137.092381446IPR003657WRKY domain
SMARTSM007741.1E-39386445IPR003657WRKY domain
PfamPF031061.3E-25387444IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MSARPPPQPR PRLALPPRST AESLFTGAGD TSPGPLTLAS ALFPSDADGG GGPGGASSSA  60
AGAATFTQLL TGSLAPPPPP QQRHDAERGR GGGVARAGPA LSVAPPASAS AGASVFTVPP  120
GLSPSGLFDS PGLLFSPAMG GFGMSHQQAL AQVTAQATHS PLRMFDHLEQ PSFSTAATMS  180
GALQHMNSAA SMAGISDMTM ATANNENTSF QSAEASQRYQ VNAPVDKPAD DGYNWRKYGQ  240
KVVKGSDCPR SYYKCTHPNC PVKKKVEHAE DGQISEIIYK GKHNHQRPPN KRAKDGNSSA  300
ADHNEQSNDT ASGLSAAKRD QDNIYGMSEQ ASGLSDGDDM DDGESRPHEV DDADNESKRR  360
NIHISSQRTL SEPKIIVQTT SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTFAGCNVR  420
KHIERCSSDP KAVITTYEGK HNHEPPVGRG GNQNAGMSSQ QKGQNNVSSN QASFSRPDLS  480
NANQMPIGIL QFKSEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-38220446877Probable WRKY transcription factor 4
2lex_A6e-38220446877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1391800.0embryo| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143765
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143765_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341960.0BT034196.1 Zea mays full-length cDNA clone ZM_BFc0028G06 mRNA, complete cds.
GenBankBT0538110.0BT053811.1 Zea mays full-length cDNA clone ZM_BFb0199A02 mRNA, complete cds.
GenBankBT0548220.0BT054822.1 Zea mays full-length cDNA clone ZM_BFb0078G18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130833.10.0uncharacterized protein LOC100191937
SwissprotQ9XI901e-121WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLB4FAQ80.0B4FAQ8_MAIZE; Putative WRKY transcription factor 4
STRINGGRMZM2G143765_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-104WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]