PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143640_P01
Common NameLOC103636453, ZEAMMB73_706756, Zm.144302
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 205aa    MW: 23038.4 Da    PI: 7.9182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143640_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-14138182347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +W++eE+ l++++ +++G g+W+ I+r    +Rt+ q+ s+ qky
  GRMZM2G143640_P01 138 PWSEEEHRLFLQGLEKYGRGDWRNISRFSVRTRTPTQVASHAQKY 182
                        7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0134496IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-104593IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-44693IPR009057Homeodomain-like
PROSITE profilePS500906.2724794IPR017877Myb-like domain
CDDcd001670.001914885No hitNo description
PROSITE profilePS5129416.981131187IPR017930Myb domain
SuperFamilySSF466892.66E-17133186IPR009057Homeodomain-like
SMARTSM007173.6E-11135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.8E-17135186IPR006447Myb domain, plants
PfamPF002491.0E-11138182IPR001005SANT/Myb domain
CDDcd001673.99E-11138183No hitNo description
Gene3DG3DSA:1.10.10.601.0E-11138185IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDFHHSSSSS VHAHAAAARP WIKAEDFNPS SSVHAAGPPA VPAAARPWNR AEDKVFESAL  60
VAWPEHTPDR WALVAAQLPG RTPRDAWEHY EALVADVDLI ERGAVDAPSC WDDDDGDHQV  120
RGAGADRARR EARRPGIPWS EEEHRLFLQG LEKYGRGDWR NISRFSVRTR TPTQVASHAQ  180
KYFNRQFNPA SRNSKRKSIH DITTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1443109672RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.301808e-83ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143640
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143640_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713161e-111EU971316.1 Zea mays clone 361991 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657026.11e-148transcription factor DIVARICATA
SwissprotQ8S9H71e-45DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLK7VAU01e-147K7VAU0_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G143640_P011e-147(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.17e-45Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]