PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143433_P01
Common NameGRAS17, LOC103626839
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 416aa    MW: 43484.9 Da    PI: 5.5444
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143433_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS282.71.1e-86384164374
               GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPi 90 
                        l+++ A  ++ gd   a+++ a++  +  ++gd+  Rla++f++ALa+ + ++         + + +             +a+ +++++ P+
  GRMZM2G143433_P01  38 LVVASAGLLHRGDVDGARRATAEVLSTMDQRGDAADRLAHHFARALARLVDDKAAAAGGGDVAAAPA--GgapppAPPGPTAYLAYNQIAPF 127
                        5677888999999**********************************99999444433222222222..1234556777788999******* PP

               GRAS  91 lkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                        l+f+hltaNqaIl+a+++     +r+Hi+D+d+ +G+QWp+Llqa+a+R+    gp ++RiTg g+    +++ l +tg+rL+ fA++l++p
  GRMZM2G143433_P01 128 LRFAHLTANQAILDAAASTsggaRRLHIVDLDAAHGVQWPPLLQAIANRAdpaVGPLEVRITGAGP----DRDVLLRTGDRLRAFASSLNLP 215
                        ***************987777779*************************96666688*********....9********************* PP

               GRAS 176 fefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse....sFlerfle 259
                        f+f++l   ++ +l++     L+++++E+laVn+vl lhrl   ++++     ++Lk vks++P vv+++e+ea+  +s     ++ +r++ 
  GRMZM2G143433_P01 216 FRFHPLhlpYSVQLAADPNTGLELHSDETLAVNCVLFLHRLG-GEGEV----ATFLKWVKSMNPAVVTIAEKEANSiGSDdcsdDLPRRVTA 302
                        ******766666788888889********************8.44444....56*******************999766567779******* PP

               GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr 350
                        a++yysa+fd+lea++p+ s +r  vE e+lgrei  +++       e    +  W ++ ++aG++p pls +a++qa+lllr ++ s+gy 
  GRMZM2G143433_P01 303 AMSYYSAVFDALEATVPPGSADRLLVESEVLGREIDAALTPGRVG--EHSWGFDAWASAARTAGLSPRPLSAFAVSQARLLLRLHYpSEGYV 392
                        ***************************************998887..8899***************************************** PP

               GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                         ee +g+ +lgW++rpL++vS+W+
  GRMZM2G143433_P01 393 AEEARGACFLGWQTRPLMAVSSWQ 416
                        ***********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.1729395IPR005202Transcription factor GRAS
PfamPF035143.7E-8438416IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLGAPGHDGD DAAERAQEQA AAAAAAAADD APSSPRGLVV ASAGLLHRGD VDGARRATAE  60
VLSTMDQRGD AADRLAHHFA RALARLVDDK AAAAGGGDVA AAPAGGAPPP APPGPTAYLA  120
YNQIAPFLRF AHLTANQAIL DAAASTSGGA RRLHIVDLDA AHGVQWPPLL QAIANRADPA  180
VGPLEVRITG AGPDRDVLLR TGDRLRAFAS SLNLPFRFHP LHLPYSVQLA ADPNTGLELH  240
SDETLAVNCV LFLHRLGGEG EVATFLKWVK SMNPAVVTIA EKEANSIGSD DCSDDLPRRV  300
TAAMSYYSAV FDALEATVPP GSADRLLVES EVLGREIDAA LTPGRVGEHS WGFDAWASAA  360
RTAGLSPRPL SAFAVSQARL LLRLHYPSEG YVAEEARGAC FLGWQTRPLM AVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-466941637375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.316611e-101endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143433
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143433_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276920.0KJ727692.1 Zea mays clone pUT5631 GRAS transcription factor (GRAS17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645406.10.0protein MONOCULM 1
SwissprotQ84MM91e-138MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A060D6F10.0A0A060D6F1_MAIZE; GRAS transcription factor (Fragment)
TrEMBLA0A3L6EJH70.0A0A3L6EJH7_MAIZE; Protein MONOCULM 1
STRINGGRMZM2G143433_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-76GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]