PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143274_P01
Common NameZEAMMB73_437657, Zm.128298
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 268aa    MW: 28484.6 Da    PI: 5.7412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143274_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45e-162370148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l   ++ +G  tW+++a+  g++R++k+c++rw++yl
  GRMZM2G143274_P01 23 KGLWSPEEDERLFTHITYHGVSTWSSVAQLAGLRRSGKSCRLRWLNYL 70
                       678*******************************************97 PP
2Myb_DNA-binding45.51.7e-1478119346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + ++ E+e ++ + + lG++ W+tIa++m+ gRt++++k++w++
  GRMZM2G143274_P01  78 PISKREEETIISLQQSLGNR-WSTIAARMP-GRTDNEIKNYWNS 119
                        56889***************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.891870IPR017930Myb domain
SuperFamilySSF466891.72E-2722117IPR009057Homeodomain-like
SMARTSM007177.5E-112272IPR001005SANT/Myb domain
PfamPF002491.1E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-212477IPR009057Homeodomain-like
CDDcd001672.64E-92670No hitNo description
PROSITE profilePS5129421.47771125IPR017930Myb domain
SMARTSM007176.4E-1375123IPR001005SANT/Myb domain
PfamPF002493.8E-1278119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2378125IPR009057Homeodomain-like
CDDcd001676.18E-1078118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVRKPIHADD AGAKSTEASK ERKGLWSPEE DERLFTHITY HGVSTWSSVA QLAGLRRSGK  60
SCRLRWLNYL RPDLKKEPIS KREEETIISL QQSLGNRWST IAARMPGRTD NEIKNYWNSR  120
IRKRLNAAAS RAAGCGDGGD SAAEPSGAAA AGGKEDSANA APPPAAQPTP IPARFPVFGC  180
QLPDGAGGGI SSPGSGKSPQ SSTTASMRQN AGDESDASDG GGGDSDMVHF LSFDDLDYPG  240
DLLIDVPGAM DAWESQLCYA NPMMSSLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-252312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143274
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143274_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715590.0EU971559.1 Zea mays clone 367166 anthocyanin regulatory C1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151654.10.0anthocyanin regulatory C1 protein
TrEMBLB6U2U40.0B6U2U4_MAIZE; Anthocyanin regulatory C1 protein
STRINGGRMZM2G143274_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Representative plantOGRP1595433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-48myb domain protein 61