PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143205_P03
Common NameLOC100193150
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CAMTA
Protein Properties Length: 424aa    MW: 48653.9 Da    PI: 10.1248
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143205_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1155.61.1e-48121123102
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e ++rwlk++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v+ l+cyYah+e+np 
  GRMZM2G143205_P03  12 EEaRSRWLKPSEVYYILQNHERFPITHEAPKKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDSLSCYYAHGEQNPC 103
                        5569**************************************************************************************** PP

               CG-1  94 fqrrcywlL 102
                        fqrrc+w+ 
  GRMZM2G143205_P03 104 FQRRCFWME 112
                        *******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143766.1967133IPR005559CG-1 DNA-binding domain
SMARTSM010763.6E-5610161IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4113113IPR005559CG-1 DNA-binding domain
SMARTSM0001527218240IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364219247IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525403.45E-6277324IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.693277306IPR000048IQ motif, EF-hand binding site
SMARTSM0001514278298IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057279297IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6299321IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731300328IPR000048IQ motif, EF-hand binding site
PfamPF006129.2E-6301321IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MSQSFDINVL REEARSRWLK PSEVYYILQN HERFPITHEA PKKPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDS LSCYYAHGEQ NPCFQRRCFW MEKMVAALLA  120
AGASATAVTD PTAQDPVGKT AAFLASERGH TGLAGYLSEV SLTSYLASLT IEESDVSKGS  180
AEVEAERAVE GISQRNAQRH GGTEDELSMK DSLAAVRNAA QAAARIQNAF RAFSFRKRQQ  240
KTARLRDVYG MTQEDIDELA AASRLYHQAH ASSGQFYDRA AVSIQKKYKG WKGRKHFLNM  300
RRNAVKIQAH VRGHQVRKKY RTIVSTVSVL EKVILRWRRK GHGLRGFRAE QQPMVEAIEE  360
DDEEDDDFDD DEAVKVFRRQ KVDQAVKEAV SRVLSMVDST EARMQYRRML EEFRQATNWK  420
DQMK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.278830.0embryo| endosperm| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143205
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143205_P03
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156968.11e-175calmodulin-binding transcription activator 4
SwissprotQ9FYG23e-85CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A1D6ECQ20.0A0A1D6ECQ2_MAIZE; Calmodulin-binding transcription activator 4
TrEMBLA0A1D6ECQ90.0A0A1D6ECQ9_MAIZE; Calmodulin-binding transcription activator 4
STRINGGRMZM2G143205_P011e-174(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.14e-73Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]