PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143205_P01
Common NameLOC100193150
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CAMTA
Protein Properties Length: 996aa    MW: 112206 Da    PI: 6.5189
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143205_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11764.9e-55121273117
               CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                        +e ++rwlk++e++ iL+n+e++ +t+e++++p+sgsl+Lynr++ ryfr+DG++w++kkdg+tv E+he+LKvg+v+ l+cyYah+e+np 
  GRMZM2G143205_P01  12 EEaRSRWLKPSEVYYILQNHERFPITHEAPKKPPSGSLFLYNRRVNRYFRRDGHTWRRKKDGRTVGEAHERLKVGNVDSLSCYYAHGEQNPC 103
                        5569**************************************************************************************** PP

               CG-1  94 fqrrcywlLeeelekivlvhylev 117
                        fqrrc+w+Le ++e+ivlv+y+ev
  GRMZM2G143205_P01 104 FQRRCFWMLEPAYEHIVLVQYREV 127
                        **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.7587133IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-6910128IPR005559CG-1 DNA-binding domain
PfamPF038599.3E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.3E-7422513IPR013783Immunoglobulin-like fold
PfamPF018339.6E-7422494IPR002909IPT domain
SuperFamilySSF484036.71E-15449497IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.4E-16614711IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.71E-15616713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512618710IPR020683Ankyrin repeat-containing domain
CDDcd002041.07E-8623710No hitNo description
PfamPF127962.8E-6639711IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.301651683IPR002110Ankyrin repeat
SMARTSM002489.7E-5651680IPR002110Ankyrin repeat
SMARTSM002484600690719IPR002110Ankyrin repeat
SMARTSM0001527771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.364772800IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693830859IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.12E-5830877IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001514831851IPR000048IQ motif, EF-hand binding site
PfamPF006120.016832850IPR000048IQ motif, EF-hand binding site
SMARTSM000153.7E-6852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.731853881IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-5854874IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MSQSFDINVL REEARSRWLK PSEVYYILQN HERFPITHEA PKKPPSGSLF LYNRRVNRYF  60
RRDGHTWRRK KDGRTVGEAH ERLKVGNVDS LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVAEG RYYSSQLSNG PPEPLSSLGY PNAICGNQYH RSTSGTSEGS ESHQSYSNLS  180
SVTEVSSYSG NKEYNKNDGS LLSIPEVGHT CQQNQTGNGN SKNKSELNMA LKKIAEQLSL  240
GEDDDDDYIY SNQTHSMGGD NQIKQIRQEG TQKGLSRNIA PSWEDVLHSS SGLPTSSIYQ  300
QSDVKYQKKS EYQPPEILDS SDLRIQLSAT KRFLLGPEAS IDSPSLNSVL RNRVNSVTDT  360
ISAYDSRFES SLNPDWQTKT ALTFQSNSQG SEITELFDHD HFEPYSREDT TISLGQTNKF  420
NIREVSPEWA FSYEITKVII TGDFLCDPSN LCWAVMFGDN EVPVEIVQPG VLRCHTPLHS  480
NGNLRICITS GNREVCSEFK DFEFRSKPTS SSFTDIAPSS RHLKSSEELL LLAKFARMLL  540
SGNGNREVPD GDPQSGQCPK LKTNEELWDR LINELKVGCE NPLSSVDWIV EQLLKSNLQQ  600
WLSVKLRGFN GTDFLSKQEQ GIIHLISALG YEWALSPVLS AGVGLNFRDS NGWTALHWAA  660
YFGREKMVAA LLAAGASATA VTDPTAQDPV GKTAAFLASE RGHTGLAGYL SEVSLTSYLA  720
SLTIEESDVS KGSAEVEAER AVEGISQRNA QRHGGTEDEL SMKDSLAAVR NAAQAAARIQ  780
NAFRAFSFRK RQQKTARLRD VYGMTQEDID ELAAASRLYH QAHASSGQFY DRAAVSIQKK  840
YKGWKGRKHF LNMRRNAVKI QAHVRGHQVR KKYRTIVSTV SVLEKVILRW RRKGHGLRGF  900
RAEQQPMVEA IEEDDEEDDD FDDDEAVKVF RRQKVDQAVK EAVSRVLSMV DSTEARMQYR  960
RMLEEFRQAT AELEGSNEVT SIFDSDLELL GINNFM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.279740.0embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143205
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143205_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345577.10.0uncharacterized protein LOC100193150
RefseqNP_001345579.10.0uncharacterized protein LOC100193150
TrEMBLA0A1D6ECQ60.0A0A1D6ECQ6_MAIZE; Calmodulin-binding transcription activator 4
STRINGGRMZM2G143205_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-141Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains