PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G143046_P02

Common Name

LOC100384300

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

MYB

Protein Properties

Length: 336aa MW: 37092 Da PI: 5.5271

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G143046_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.9e-16	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++ G g+W+ ar g++Rt+k+c++rw++yl GRMZM2G143046_P02 42 RGPWTVDEDLTLVNYIADNGEGRWNNLARAAGLKRTGKSCRLRWLNYL 89 89********************************************97 PP
2	Myb_DNA-binding	55.5	1.3e-17	95	138	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++d+++++G++ W++Ia++++ gRt++++k++w++ GRMZM2G143046_P02 95 RGNFSADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 138 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-21	36	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.847	37	93	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-29	39	136	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-13	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-14	42	89	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-9	44	89	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.0E-24	93	143	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.599	94	144	IPR017930	Myb domain
SMART	SM00717	7.0E-15	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-15	95	138	IPR001005	SANT/Myb domain
CDD	cd00167	8.44E-11	97	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0006310	anatomy	tassel floret
PO:0006354	anatomy	ear floret
PO:0009054	anatomy	inflorescence bract
PO:0009066	anatomy	anther
PO:0009074	anatomy	style
PO:0020136	anatomy	ear inflorescence
PO:0001007	developmental stage	pollen development stage
PO:0007001	developmental stage	early whole plant fruit ripening stage
PO:0007016	developmental stage	whole plant flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MATTQSCQSR SSACSKAAAC FPAAGGAQEE AENDNNKPEL RRGPWTVDED LTLVNYIADN 60 GEGRWNNLAR AAGLKRTGKS CRLRWLNYLR PDVKRGNFSA DEQLLILDLH TRWGNRWSKI 120 AQHLPGRTDN EIKNYWRTRV QKHAKQLNCD ANSKRFKDAM RYLWMPHLAD DVDTIAAAND 180 DDEDHHHHLR LLVLHHHQAQ HLQQAAAAAG GAANDLAAGA YDVRQLHALP SSGMAATSSS 240 DSLASESYDD GGLLFANLRA GEMLMDGGDW AAQQEADQGL WPPPPPPPSD LDQSVVQAAG 300 AGAGQFQDME LSGWVQGFSE SITDNFWALE EIWKMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-25	38	142	23	126	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.103437	0.0	ovary

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G143046

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269\|PubMed:11310740}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G143046_P02

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:11310740}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT069744	0.0	BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001170329.1	0.0	uncharacterized protein LOC100384300
Swissprot	Q2QZJ8	1e-105	JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBL	C0PN75	0.0	C0PN75_MAIZE; MYB transcription factor
STRING	GRMZM2G143046_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	4e-74	myb domain protein 112

Link Out ? help Back to Top
Phytozome	GRMZM2G143046_P02

Publications ? help Back to Top
Ahn IP,Kim S,Kang S,Suh SC,Lee YH Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct. Phytopathology, 2005. 95(11): p. 1248-55 [PMID:18943354] Campos-Soriano L,García-Martínez J,San Segundo B The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection. Mol. Plant Pathol., 2012. 13(6): p. 579-92 [PMID:22212404] Yokotani N, et al. Role of the rice transcription factor JAmyb in abiotic stress response. J. Plant Res., 2013. 126(1): p. 131-9 [PMID:22847900] Wang D, et al. Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response. Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007 [PMID:26740780] Fred AK,Kiswara G,Yi G,Kim KM Screening Rice Cultivars for Resistance to Bacterial Leaf Blight. J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45 [PMID:26869604]