PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G143046_P01
Common NameLOC100384300, MYB100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 351aa    MW: 38796.8 Da    PI: 5.7846
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G143046_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.2e-1657104148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+WT +Ed+ lv++++  G g+W+  ar  g++Rt+k+c++rw++yl
  GRMZM2G143046_P01  57 RGPWTVDEDLTLVNYIADNGEGRWNNLARAAGLKRTGKSCRLRWLNYL 104
                        89********************************************97 PP

2Myb_DNA-binding55.41.4e-17110153146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E++l++d+++++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G143046_P01 110 RGNFSADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 153
                        89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-2151107IPR009057Homeodomain-like
PROSITE profilePS5129423.84752108IPR017930Myb domain
SuperFamilySSF466895.99E-2954151IPR009057Homeodomain-like
SMARTSM007171.6E-1356106IPR001005SANT/Myb domain
PfamPF002492.8E-1457104IPR001005SANT/Myb domain
CDDcd001672.31E-959104No hitNo description
Gene3DG3DSA:1.10.10.609.7E-24108158IPR009057Homeodomain-like
SMARTSM007177.0E-15109157IPR001005SANT/Myb domain
PROSITE profilePS5129418.599109159IPR017930Myb domain
PfamPF002492.9E-15110153IPR001005SANT/Myb domain
CDDcd001671.55E-10112153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MATTQSCQSR SSACSKAAAC FPAAVAVDEE HGHHSHQLKG GAQEEAENDN NKPELRRGPW  60
TVDEDLTLVN YIADNGEGRW NNLARAAGLK RTGKSCRLRW LNYLRPDVKR GNFSADEQLL  120
ILDLHTRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLNCDANSKR FKDAMRYLWM  180
PHLADDVDTI AAANDDDEDH HHHLRLLVLH HHQAQHLQQA AAAAGGAAND LAAGAYDVRQ  240
LHALPSSGMA ATSSSDSLAS ESYDDGGLLF ANLRAGEMLM DGGDWAAQQE ADQGLWPPPP  300
PPPSDLDQSV VQAAGAGAGQ FQDMELSGWV QGFSESITDN FWALEEIWKM Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-255315723126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1034370.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G143046
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G143046_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697440.0BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170329.10.0uncharacterized protein LOC100384300
SwissprotQ2QZJ81e-105JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLC0PN750.0C0PN75_MAIZE; MYB transcription factor
STRINGGRMZM2G143046_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-74myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]