PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G143046_P01 | ||||||||
Common Name | LOC100384300, MYB100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 38796.8 Da PI: 5.7846 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.2e-16 | 57 | 104 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed+ lv++++ G g+W+ ar g++Rt+k+c++rw++yl GRMZM2G143046_P01 57 RGPWTVDEDLTLVNYIADNGEGRWNNLARAAGLKRTGKSCRLRWLNYL 104 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 110 | 153 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++d+++++G++ W++Ia++++ gRt++++k++w++ GRMZM2G143046_P01 110 RGNFSADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 153 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-21 | 51 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.847 | 52 | 108 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 54 | 151 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 56 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 57 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.31E-9 | 59 | 104 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-24 | 108 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 109 | 157 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.599 | 109 | 159 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-15 | 110 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-10 | 112 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MATTQSCQSR SSACSKAAAC FPAAVAVDEE HGHHSHQLKG GAQEEAENDN NKPELRRGPW 60 TVDEDLTLVN YIADNGEGRW NNLARAAGLK RTGKSCRLRW LNYLRPDVKR GNFSADEQLL 120 ILDLHTRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLNCDANSKR FKDAMRYLWM 180 PHLADDVDTI AAANDDDEDH HHHLRLLVLH HHQAQHLQQA AAAAGGAAND LAAGAYDVRQ 240 LHALPSSGMA ATSSSDSLAS ESYDDGGLLF ANLRAGEMLM DGGDWAAQQE ADQGLWPPPP 300 PPPSDLDQSV VQAAGAGAGQ FQDMELSGWV QGFSESITDN FWALEEIWKM Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-25 | 53 | 157 | 23 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.103437 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G143046 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G143046_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069744 | 0.0 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170329.1 | 0.0 | uncharacterized protein LOC100384300 | ||||
Swissprot | Q2QZJ8 | 1e-105 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | C0PN75 | 0.0 | C0PN75_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G143046_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-74 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G143046_P01 |
Entrez Gene | 100384300 |
Publications ? help Back to Top | |||
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