PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142999_P01
Common NameABI38, ZEAMMB73_856314, Zm.133432
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 277aa    MW: 29872.2 Da    PI: 10.4147
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142999_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.81.2e-2932147199
                        EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                        f+kv tpsdv+k++rlv+pk++ae++                  gg   ++  l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L
  GRMZM2G142999_P01  32 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldassaaaaaaaaaaGGG--KGLVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRL 121
                        99****************************99998888888876444..5679*************************************** PP

                        -TT-EEEEEE-SS.SEE..EEEEE-S CS
                 B3  75 kegDfvvFkldgr.sefelvvkvfrk 99 
                         +gD+v+F +     ++++++ ++r+
  GRMZM2G142999_P01 122 GAGDTVLFARGAGgARGRFFIDFRRR 147
                        *********88555888889999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-3927148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-3029147IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-2530127No hitNo description
PROSITE profilePS5086313.81732148IPR003340B3 DNA binding domain
PfamPF023621.9E-2732147IPR003340B3 DNA binding domain
SMARTSM010191.7E-2132148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEFTPAHAHA RVVEDSERPR GGVAWVEKEH MFEKVVTPSD VGKLNRLVIP KQHAERYFPA  60
LDASSAAAAA AAAAAGGGKG LVLSFEDRAG KAWRFRYSYW NSSQSYVMTK GWSRFVKEKR  120
LGAGDTVLFA RGAGGARGRF FIDFRRRRQD LAFLQPTLAS AQRLLPLPSV PICPWQDYGA  180
SAPAPNRHVL FLRPQVPAAV VLKSVPVHVA ASAVEATMSK RVRLFGVNLD CPPDAEDSAT  240
VPRGRAASTT LLQLPSPSSS TSSSTAGKDV CCLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-51271473113B3 domain-containing transcription factor NGA1
5os9_B9e-51271473113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142999
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142999_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269660.0KJ726966.1 Zea mays clone pUT3666 ABI3VP1 transcription factor (ABI38) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660105.10.0putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-106Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLK7WD320.0K7WD32_MAIZE; ABI3VP1 transcription factor
STRINGGRMZM2G142999_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Representative plantOGRP1726823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-49B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]