PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142932_P02
Common NameLOC103647749, Zm.98149
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 367aa    MW: 39533.3 Da    PI: 7.8969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142932_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.3e-13297342655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  GRMZM2G142932_P02 297 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKELQ 342
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16294352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-13295346No hitNo description
Gene3DG3DSA:4.10.280.106.3E-16296354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-13297347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10297342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYGSPVSKDL NVPVQPPMIS SGLLRYRSAP STVLGDLCED FLPSASGAAS PDNVFSRFLA  60
EHHTRDDKPS PPPPAAVHFP SEADMASQQQ QQMMFHSHHH QQQQQMVGAK SGLYRTVSSD  120
IETAAAVGTG GASNLIRQSS SPAGFLDHLN MDNGYGAMLR AGMATADSLA GSGSRLKGQL  180
SFSSRQGSLM SQISEMDSEE VGGSSPEAAG GGRGYIPGYP MGSGSGWEDS SALMSDNLSG  240
LKRPRDSSEP GQSRITHQFS LPKTSSEMAS IDKFLQFQDA VPCKIRAKRG CATHPRSIAE  300
RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKE LQKQVKVLKE TQANCTCPAS  360
KSQQHSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.647970.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142932
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142932_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605910.0EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670485.10.0transcription factor bHLH130 isoform X1
TrEMBLA0A1D6EY170.0A0A1D6EY17_MAIZE; Transcription factor bHLH130
STRINGGRMZM2G142932_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-66bHLH family protein