PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142932_P01
Common NameZm.98149
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 391aa    MW: 42229.5 Da    PI: 7.6633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142932_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-13300345655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  GRMZM2G142932_P01 300 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKELQ 345
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.989294344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15297353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.87E-13298349No hitNo description
Gene3DG3DSA:4.10.280.106.3E-15299355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-10300345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-13300350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MYGSPVSKDL NVPVQPPMIS SGLLRYRSAP STVLGDLCED FLPSASGAAS PDNVFSRFLA  60
EHHTRDDKPS PPPPAAVHFP SEADMASQQQ QQMMFHSHHH QQQQQMVGAK SGLYRTVSSD  120
IETAAAVGTG GASNLIRQSS SPAGFLDHLN MDNGYGAMLR AGMATADSLA GSGSRLKGQL  180
SFSSRQGSLM SQISEMDSEE VGGSSPEAAG GGRGYIPGYP MGSGSGWEDS SALMSDNLSG  240
LKRPRDSSEP GQSVQSRITH QFSLPKTSSE MASIDKFLQF QDAVPCKIRA KRGCATHPRS  300
IAERVRRTKI SERIRKLQEL VPNMDKQTNT SDMLDLAVDY IKELQKQVKN SKASSLGIEK  360
DFVLAKGQVT DESIEAIDQL RVAIRKELLC R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.647970.0ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142932
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142932_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605910.0EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds.
GenBankKJ7277490.0KJ727749.1 Zea mays clone pUT5690 bHLH transcription factor (bHLH90) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670485.10.0transcription factor bHLH130 isoform X1
TrEMBLA0A1D6EY170.0A0A1D6EY17_MAIZE; Transcription factor bHLH130
STRINGGRMZM2G142932_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-61bHLH family protein