PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142751_P01
Common NameZm.79824
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TCP
Protein Properties Length: 379aa    MW: 39088.2 Da    PI: 8.2579
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142751_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.85.5e-40532252135
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                        ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+ +d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s  s++    
  GRMZM2G142751_P01  53 PPKRTSSKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHRTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSYFSIPahlr 144
                        789******************************************************************99988888999998666668888 PP

                TCP  89 ................................kaaksaakskksqksaasalnlakesrakarar....arertrekmriknk 135
                                                        +a +s  +   s +s +  l+++  s+++a a+    ++ r++++m+++++
  GRMZM2G142751_P01 145 aaglpgprfsgargdpwervvglgfggaegppSATSS--PLLLSFHSGSVGLDVSSPSSSSAAANsdlsKKRRWEQEMQQQQQ 225
                        8889999999999999999999999999986422222..44444444444466666444333333335333366666666544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-4357227IPR005333Transcription factor, TCP
PROSITE profilePS5136927.45859113IPR017887Transcription factor TCP subgroup
Gene3DG3DSA:1.10.30.100.001211239IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010029Biological Processregulation of seed germination
GO:0010229Biological Processinflorescence development
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDATGDAGGG RRPNFPLQLL EKKEEQPCST SPAAAVGAGA NGSGEMQMKK VAPPKRTSSK  60
DRHTKVDGRG RRIRMPAICA ARVFQLTREL GHRTDGETIE WLLQQAEPAV IAATGTGTIP  120
ANFTSLNISL RSSGSYFSIP AHLRAAGLPG PRFSGARGDP WERVVGLGFG GAEGPPSATS  180
SPLLLSFHSG SVGLDVSSPS SSSAAANSDL SKKRRWEQEM QQQQQQYQQQ MAGYTQSQMP  240
GTVWMVPSSN AQAAAAAGGG GSSNNESIWT FPPQPGSGDG GAAPVYRGVP SGLHFMNFPA  300
PMALIPGGQQ LGIGHENGGS SSGGEGHMGV LAALNAYRAH AVTVAAPAAQ NGAEGGSSQQ  360
QQRGGGERQD SMSPSDDDS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142751
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00396DAPTransfer from AT3G47620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142751_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545320.0BT054532.1 Zea mays full-length cDNA clone ZM_BFc0140K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146064.10.0uncharacterized protein LOC100279595
SwissprotQ93Z008e-54TCP14_ARATH; Transcription factor TCP14
TrEMBLB7ZYZ00.0B7ZYZ0_MAIZE; Transcription factor TCP14
STRINGGRMZM2G142751_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-47TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]