PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G142502_P03 | ||||||||
Common Name | LOC100381642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 569aa MW: 62939.3 Da PI: 5.5601 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00059 | 66 | 87 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rH r+H GRMZM2G142502_P03 66 KCTKCSREFCSAINFRRHTRVH 87 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.577 | 65 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
MNASRKSSHL SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKAND LPGWPLFSPP 60 KVQLDKCTKC SREFCSAINF RRHTRVHRRS LKIDRDFPKN RDLLAAFWNK LTVDDASKIL 120 SLTGVVIEGV TGSSILTALS SWMCKPGYAS LPVAYARAGS ELLDLIQAKP SMHLPVSSDE 180 LFSLLDEASE KTFLCTNTAA CIQKFLFDGE VEKIATELKN VVSCASYMLE QKLLEAWCAD 240 KTAEALRCQK LLEDEEEAAQ KRQAELMERK RMKKLRQKEQ RLKNLKDEDA TVQSPEIMDD 300 ATCSTAIQSV NSIYDPDCFE QEESQYLQFP ALITLETDND FNVDLPVEDI SCDLGPEMDK 360 GVVLRQQVVS RHHLGRTEKL AESSILSGSV VTSKHAALAR PSNYKDPNVC SAPSRNKTCE 420 LKLRSEIEEQ CQKHELDVDE RGIGPSKNSR VLIGSIIVAI KDCSEHLLDL GSKNDPVPPN 480 VKTKKHASVK VVQQVTHEGN RNEGVPDSDN RSSLSVTTDE ISYSTCCDAD LAVDEHLQCT 540 TFSSEEATAF LSQRWKEAIA ADHVKLVVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 274 | ERKRMKKL |
2 | 272 | 282 | KKLRQKEQRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19047 | 0.0 | ear| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G142502 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G142502_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061868 | 0.0 | BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001167928.1 | 0.0 | uncharacterized protein LOC100381642 | ||||
TrEMBL | C0HHR2 | 0.0 | C0HHR2_MAIZE; C2H2-like zinc finger protein | ||||
STRING | GRMZM2G142502_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-103 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G142502_P03 |
Entrez Gene | 100381642 |
Publications ? help Back to Top | |||
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