PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G142179_P01
Common NameEREB50, Zm.5956
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 354aa    MW: 38189.4 Da    PI: 4.4914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G142179_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19113164156
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  GRMZM2G142179_P01 113 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRGA 164
                        689*******.**********88.....55*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-28113173No hitNo description
PfamPF008474.1E-12113163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28114172IPR001471AP2/ERF domain
PROSITE profilePS5103223.196114171IPR001471AP2/ERF domain
SMARTSM003802.2E-33114177IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20114172IPR016177DNA-binding domain
PRINTSPR003674.5E-10115126IPR001471AP2/ERF domain
PRINTSPR003674.5E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MWPMEEEMFL AVKRTEHVEV TSRAMDSAPA AGPRTVRVFC DDNDATDSSG DEAEGAAARR  60
RVKRYVQEIR LQRAVPVKEE AASARAVAGE RPRPLALPGR KRKSDGAGAG AEPRFRGVRR  120
RPWGKYAAEI RDPWRRVRVW LGTFDTAEEA AKVYDSAAIQ LRGADATTNF EHAAVPVPVP  180
DEVAGRLPQP PPAPASKNAS SSATSSYDSG EESHAAAASP TSVLRTFPPS SAAADATCKK  240
PAPAAETDES TGVGGSRSSV YAYPFFANDD CFGGDFPPLY TDFDLLADFP EPTLDFLADI  300
PEEKLPPLPE PFPAASPDEC PSDAEAASPA RWQQVDDFFQ DITDLFQIDP LPVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20106172573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.59560.0ear| meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G142179
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G142179_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424210.0EU942421.1 Zea mays clone 1496106 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673498.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1D6MFB80.0A0A1D6MFB8_MAIZE; Ethylene-responsive transcription factor CRF4
STRINGGRMZM2G142179_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-30cytokinin response factor 2