PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G141955_P05 | ||||||||
Common Name | pco127567(465) | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 175aa MW: 19755.4 Da PI: 10.0454 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 173.4 | 1.4e-53 | 2 | 145 | 32 | 170 |
YABBY 32 fkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv.ssekl....senedeevprvppvirP 118 +++vtvrCGhCt+llsvnl+ ++ ++ +++l+++ +++ +l+ +++ ++ + s+s+s+ + ++ ++ne+ ++ + rP GRMZM2G141955_P05 2 LSMVTVRCGHCTNLLSVNLRALMHSVPEQDQLQQENI-RVHGTLREHHQCGGGHHLELGSSSSSRfRLPMMmsyaPQNEHLLQEQTLNNARP 92 679****************************987654.466677766666555554444433333022222344322222222333345676 PP YABBY 119 .PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl GRMZM2G141955_P05 93 aPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 145 6**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-53 | 1 | 145 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.14E-8 | 89 | 139 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-5 | 94 | 139 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MLSMVTVRCG HCTNLLSVNL RALMHSVPEQ DQLQQENIRV HGTLREHHQC GGGHHLELGS 60 SSSSRFRLPM MMSYAPQNEH LLQEQTLNNA RPAPEKRQRV PSAYNRFIKE EIRRIKANNP 120 DISHREAFST AAKNWAHYPN IHFGLNSGRE GGKNKLVDEA VAAVAVAPKK IQGFY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118059 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G141955 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G141955_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039787 | 0.0 | BT039787.1 Zea mays full-length cDNA clone ZM_BFc0045D16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140845.1 | 1e-129 | uncharacterized protein LOC100272921 | ||||
Swissprot | Q2QM17 | 7e-63 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A1D6KGI4 | 1e-128 | A0A1D6KGI4_MAIZE; Putative axial regulator YABBY 2 | ||||
TrEMBL | B4FRP9 | 1e-128 | B4FRP9_MAIZE; C2C2-YABBY transcription factor | ||||
STRING | GRMZM2G141955_P03 | 1e-129 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-40 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G141955_P05 |