PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G141679_P01
Common NameEREB109, Zm.87712
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 296aa    MW: 31450 Da    PI: 7.5793
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G141679_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-21118167255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  GRMZM2G141679_P01 118 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 167
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.12E-31117177No hitNo description
SuperFamilySSF541714.97E-23118177IPR016177DNA-binding domain
PROSITE profilePS5103223.354118175IPR001471AP2/ERF domain
SMARTSM003801.5E-35118181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-33118177IPR001471AP2/ERF domain
PfamPF008477.4E-15119167IPR001471AP2/ERF domain
PRINTSPR003672.5E-11119130IPR001471AP2/ERF domain
PRINTSPR003672.5E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006341anatomyprimary shoot system
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009089anatomyendosperm
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAATIDLSGE ELMRALEPFI RDASAHGSSP LLHPHQPLSP SSPFSFHQAV AAASSYGGNY  60
PFAAADEAGQ LSPSQMQYIQ ARLHLQRRQA QTSVLGPRAQ PMKASASAAP APARPQKLYR  120
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALAYDQ AAYRLRGDAA RLNFPDNAAS  180
RGPLHASVDA KLQSLCQSIA ASKKGAKKPA SAAAAASSSA PTSNCSSPSS DDATSSCLES  240
ATESSCPSPS PSASPGPTVP EMQQLDFSEA PWDEAAGFAL TKYPSYEIDW DSLLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20117175463ATERF1
3gcc_A3e-20117175463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.877120.0cell culture| cell lignification| ear| embryo| leaf| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G141679
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G141679_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333350.10.0uncharacterized protein LOC103632654
TrEMBLA0A060D1F10.0A0A060D1F1_MAIZE; AP2-EREBP transcription factor (Fragment)
TrEMBLA0A3L6DX050.0A0A3L6DX05_MAIZE; Ethylene-responsive transcription factor ERF060
STRINGGRMZM2G141679_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-33ERF family protein